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  • Created 03 Sep 2019

BIOME Fall Working Groups

Final Product Viewing Party

Join us on December 3rd as we celebrate the hard work of the BIOME Fall Working Groups! We will meet at 4:00 pm ET / 1:00 pm PT to watch the report out videos from all of the working groups. 

Zoom Information

BIOME Fall Speakers

The Speaker series has concluded, but presentation descriptions, slides, and recordings will remain available on the Speakers page. 

Speakers


Final Products

CC-CURE Report Out from the BIOME 2020 Institute

Caroline DeVan, Eric Dyreson, Gabriela Florido, Joanna Werner-Fraczek, Joseph Eason, Kasey Nguyen, Katie Bjornen, Kristin Jenkins, Kyla Flanagan, Maria Stanko, Mary Konsolaki, Michelle Anderson, Sam S Donovan

Version: 2.0

This resource includes a collection of videos describing some of the outcomes from the Interdisciplinary and Cross Course CURE working group.
course-based undergraduate research experience, Reference material, Abstract, Conference material, Workshop material
10
4
0
0
12.2020

Molecular CaseNet - Developing Intro Tutorials - YouTube

Jean Cardinale, Keith A. Johnson, Marie C. Montes-Matias, Natalie Stringer, Aeisha Thomas, Shuchismita Dutta

Version: 1.0

Biome Institute 2020, Summary Video
introductory biology, Molecular structure, molecular visualization, Molecular Case Study, introductory, Teaching material, Undergraduate, Faculty, Majors, Non-majors
20
8
0
0
12.2020

Social Justice & Community Change QUBES Faculty Mentoring Network 2021

Tamara Basham, Mary Mulcahy, Denise Piechnik, Pat Marsteller

Version: 2.0

In this Faculty Mentoring Network we will examine the historical practice of redlining, and how social and economic factors over the last century have created disparities in environmental conditions in our urban communities.
social justice, air quality, BIOME 2020, redlining, Presentation, Reference material, Abstract, Workshop material
5
0
0
0
12.2020

BIOME Avida ED Report video - YouTube

Louise Mead, Lee Edwards, Kevin Geedey, J. Phil Gibson, Jeremiah Wagner, Ana María González

Version: 1.0

Avida-ED is a digital evolution software program that allows students to ask questions and test hypotheses related to evolutionary concepts. Our working group explored how to incorporate Avida-ED into undergraduate biology courses.
Lab, Online course, Teaching material
11
2
0
0
12.2020

Molecular CaseNet - Students Writing Cases - YouTube

Didem Vardar-Ulu, Elizabeth Pollock, Kasandra Riley (She/Her), Nik Tsotakos, Swati Agrawal, Shuchismita Dutta

Version: 1.0

Biome Institute 2020, Summary Video
assessment, case study creation, Molecular structure, molecular visualization, Molecular Case Study, Teaching material, Undergraduate, Faculty, Advanced
9
5
0
0
12.2020

Cell Collective: Computational Modeling and Simulation Designed with the Classroom in Mind

Ehren Whigham, Carlton Rodney Cooper, Dongfang Wang, Evdokia Kastanos, Gary Laverty

Version: 1.0

This working group collaborated on content and pedagogy surrounding the use of Cell Collective to integrate computational modeling and simulation into undergraduate biology curriculum.
systems-modeling, BIOME 2020, Presentation, Reference material, Workshop material
12
4
0
0
12.2020

Social Justice Working Group - Scientist Spotlights

Pat Marsteller, Sarah Prescott, Justin Michael Bradshaw, Kristen Butela, Pratima Jindal, Rachel Pigg, Merrie Renee Richardson, Sheela Vemu, Suann Yang

Version: 2.0

This is a reporting out of the work done by participants in the Social Justice Working group that formed as part of the BIOME 2020 Institute, which is focused on the creation and use of scientist spotlights in the classroom.
social justice, scientist spotlights, BIOME 2020, Presentation, Reference material, Workshop material
31
8
0
0
12.2020

Using Natural History Collection Data in Your CURE: BLUE BIOME 2020

Anna Monfils, Debra Linton, Rachael Snodgrass, Katie Pearson, Jenn Yost, Johanna Jantzen, Douglas Soltis, Pamela Sue Soltis, Shelly Gaynor

Version: 1.0

This is the report for the BLUE working group from the Biome Institute 2020. It reflects our group's efforts and products related to CUREs and Natural History Collection Digital Data.
digitized natural history collections, BIOME 2020, Biodiversity Literacy in Undergraduate Education, Presentation, Reference material, Workshop material
24
8
0
0
12.2020

Team microBIOME Fall 2020 - DIY microbiome analysis

Davida Smyth, Alice Tarun, Christine Girtain, Melanie Lenahan, Maira Goytia, Khuanchivin Geena Sompanya, Theodore Muth

Version: 1.0

This is our final team report for this year's BIOME Institute 2020. Learn about what we got up to and what we're planning for Spring 2021. If you want more information on REMNet go here https://qubeshub.org/community/groups/remnet
microbiome, DNA Subway, DIY, REMNet microbiomes, Nephele, Tutorial, Lab, Online course, Teaching material, Reference material, Faculty, Less than 1 hour, Workshop material, Leveraging Networks
82
24
0
0
11.2020

Genomics Lessons with GEA - RNA-Seq CURES

Vince Buonaccorsi, Marcella Denise Cervantes, Douglas L Chalker, Maira Goytia, Wilson Leung, Laurel Lorenz, Laura Reed, Anne Rosenwald, Analyne Manzano Schroeder, Emily Wiley, Jason Williams

Version: 1.0

Our BIOME Group worked towards developing a set of learning goals for faculty who plan to launch a CURE based on RNA-Seq data. We also developed a workflow for analysis of either prokaryotic or eukaryotic RNA-Seq data with existing tools.
Lab, Teaching material, Faculty
77
26
0
0
11.2020

Assessment of CUREs BIOME Institute 2020 Report Out

Mentewab Ayalew, Holly Basta, John Howard Starnes, Mark Osterlund, Emily Ward, Marcie Warner, Molly Phillips

Version: 1.0

This is a video summary of the progress to date and individual plans for the Assessment of CUREs Working Group as part of 2020 BIOME Institute. ...
assessment, CUREs, BIOME 2020, Presentation, Reference material, Workshop material
96
23
0
0
11.2020