You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Microbiome Analysis with Oxford Nanopore 16S amplicon sequencing data
    The resource is a brief description of an analysis pipeline for microbiome analysis of Oxford Nanopore 16S amplicon sequence data. We tested the Kraken 2 and Krona pipeline from nanogalaxy with...

    Keywords: microbiome analysis toolNanopore

    1236

    views

    585

    downloads

    0

    comments

    0

    adaptations

    BIO 439/539: Big Data Analysis
    Course materials for BIO 439/539: Big Data Analysis

    Keywords: Rdata analysisbig datadata managementstatistical methods

    988

    views

    167

    downloads

    0

    comments

    0

    adaptations

    Chapter 10: Two-way analysis of variance
    Biostatistics Using R: A Laboratory Manual was created with the goals of providing biological content to lab sessions by using authentic research data and introducing R programming language....

    Keywords: biostatisticsR programming language

    873

    views

    488

    downloads

    0

    comments

    0

    adaptations

    LEAGSEA
    How to perform Leading Edge Analysis in Gene Set Enrichment Analysis by Broad Institute

    Keywords: videosbioinformaticsgenomicsyoutubeLEAGSEAgene set enrichmentLeading Edge Analysis

    1016

    views

    222

    downloads

    0

    comments

    0

    adaptations

    BIO 263 Ecological Data Analysis
    Course materials for BIO 263 Ecological Data Analysis

    Keywords: Rdata analysisecological datasets

    982

    views

    182

    downloads

    0

    comments

    0

    adaptations

    Yeast Cell Growth
    Numbers Count resource using Excel for data analysis

    Keywords: data analysisExcelNumbers Count

    1281

    views

    365

    downloads

    0

    comments

    0

    adaptations

    Biobyte 2 - Exploratory data analysis
    This short activity can be used to introduce the concept of exploratory data analysis and get participants to think about how this data science strategy is complementary to having students...

    Keywords: data sciencedsube

    965

    views

    639

    downloads

    0

    comments

    0

    adaptations

    AIMS- Analyzing Images to learn Mathematics and Statistics - studying leaf cutter ants to learn linear regression
    This is a teaching resource that uses fascinating images and videos of leaf cutter ants foraging in Panama to provide an engaging context for students to learn about mathematics and statistics.

    Keywords: statisticsmoduleecologydata analysisleaf cutter antsmorphologyforagingallometryeusociallinear regressionimage analysisin-class activitylab protocolproject

    1711

    views

    253

    downloads

    0

    comments

    0

    adaptations

    Chapter 9: One-way analysis of variance
    Biostatistics Using R: A Laboratory Manual was created with the goals of providing biological content to lab sessions by using authentic research data and introducing R programming language....

    Keywords: biostatisticsR programming language

    916

    views

    532

    downloads

    0

    comments

    0

    adaptations

    Chapter 8: Comparing two means: the t-test
    Biostatistics Using R: A Laboratory Manual was created with the goals of providing biological content to lab sessions by using authentic research data and introducing R programming language....

    Keywords: biostatisticsR programming language

    974

    views

    1837

    downloads

    0

    comments

    0

    adaptations

    Learn Biological Sciences and Physics through scientific process, creation, experimentation and analysis
    Microbes remain attached and grow on various surfaces whether living or non-living. These surfaces provide differential growth substances for microbes to remain attached or grow. The differential...

    Keywords: data analysisscientific methodphysicshands-onScientific InquirymicrobesBiological SciencesSpectrophotometer

    784

    views

    25

    downloads

    0

    comments

    0

    adaptations

    Module M.8 Survival analysis
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

    340

    views

    139

    downloads

    0

    comments

    0

    adaptations

    Pesticide-Driven Bee Mortality: An Introduction to Survival Analysis in R
    In this lesson, students will receive an introduction to survival analysis in R utilizing data on bee mortality caused by pesticide exposure. In their code, students will assess survivability,...

    Keywords: chi-squaredsurvivalbeespesticidesRoundupsurvival analysissurvival plotsherbicides

    976

    views

    459

    downloads

    0

    comments

    0

    adaptations

    The Human Microbiome Biodiversity in Health and Disease
    The students will analyze the human gut and vaginal microbiomes in healthy and diseased states using diversity of bacteria as determined by 16SrRNA sequence.
    1040

    views

    699

    downloads

    0

    comments

    0

    adaptations

    Tag You're It: A Lesson Investigating Study Design and Survival Analysis on an American Shad Tagging Study
    In this lesson, students will learn about the various mark-recapture and tagging methods that are used in various scientific disciplines and the information they can gather. Key elements of...

    Keywords: survival analysisAmerican ShadCox Proportional Hazards ModelStudy Design

    258

    views

    418

    downloads

    0

    comments

    0

    adaptations

    Measuring Size and Area of Digitized Specimens using ImageJ
    Use ImageJ to analyze morphological characters in digital images of natural history specimens. Skills are transferable to many organisms and other morphological measurements.

    Keywords: ImageJnatural history collectionscourse-based research experiences (CUREs)digitized natural history collections

    1259

    views

    2017

    downloads

    0

    comments

    0

    adaptations

    Single Factor Analysis of Variance (ANOVA)
    This swirl lesson introduces students to theoretical and practical concepts about single-factor ANOVA analysis and an approach to conduct this type of analysis using R.

    Keywords: ANOVATukey HSD

    776

    views

    599

    downloads

    0

    comments

    0

    adaptations

    A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!
    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    Keywords: data sciencebioinformaticsnext generation sequencingquality controlFASTQgenomicsprogrammingNIBLSElinuxmicrobiomeIllumina sequencingcommand lineFASTQEFASTPNGS analysisterminalMacemojiPhred scoreTrimmingshort read

    2597

    views

    2300

    downloads

    1

    comments

    0

    adaptations

    Spreadsheet Data Analysis Tutorial Series
    This series of self-paced tutorials show how to analyze data using a spreadsheet program.

    Keywords: Resources @ HHMI - BioInteractiveScientific ProcessStatistics and MathScientific MethodologyHigh School

    1765

    views

    315

    downloads

    0

    comments

    6

    adaptations

    Introduction to Quantitative Biology - Fall 2014 Syllabus
    Syllabus for Introduction to Quantitative Biology taught at the College of William and Mary.

    Keywords: quant biosyllabus

    1004

    views

    200

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search