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    Exploring the population dynamics of wintering bald eagles through long-term data using R
    The purpose of this modification was to take the analyses that were done in Excel and have the students perform them using R. Students were not given any R code for this activity, as R code was...

    Keywords: Resources @ ESA - TIEEcase studyR programming languagepopulation ecologyendangered speciesconservation biologymigration ecologyggplot2

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    Islands as a Tool for Teaching Ecology and Evolution
    Module for Ecology & Evolution course covering island biogeography principles, The scientific process and hypothesis testing, statistical methods (t-tests, regression), and online database use...

    Keywords: moduleResources @ AIM-UP!species richnessBiodiversityIsland biogeographyAIM-UP

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    Human Dimensions in Amphibian Conservation: Addressing Threats
    This module introduces students to the theme of human dimensions in conservation and provides them with an opportunity to engage in practices related to social science research.

    Keywords: conservationhuman dimensionsamphibianssocial scienceconceptual modelstakeholder analysisopen standardsresearch proposalSPARCnet

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    Malaise Trap Project: Involving Undergraduate Students in Network Science
    A multi-week project for upper division undergraduate students to participate in network-level science, while simultaneously learning classic entomology skills of specimen collection and...

    Keywords: entomologynetwork science4DEE Framework

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    Investigating the ecological value of migratory fishes on stream ecosystems in southern Appalachia
    Using the Ecological Society of America’s Four-Dimensional Ecology Education (4DEE) framework, students apply ecological concepts such as energy flow, nutrient cycling, migration, and climate...

    Keywords: Stream ecologynutrient cycling4DEE Frameworkfish migration

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    Globally endangered sea turtles of the Palmyra Atoll National Wildlife Refuge: A Focus on Scientific Analysis
    Based on the sea turtle case, students will (1) work on a worksheet by analyzing existing survey data, (2) conduct a literature review of two relevant research, and (3) draft a proposal for a...

    Keywords: sea turtle conservationliterature reviewResearch methodsProposal writingPalmyra Atoll

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    Backyard Beetles + Pollinators for a non-lab course on biodiversity conservation
    Backyard Beetles + Pollinators is a project to observe and evaluate plant-pollinator networks. This adaptation modifies the (adapted) modules for a non-lab course on conservation, conducted during...

    Keywords: NEONNational Ecological Observatory Network

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    Adaptation of Plants in the Human-Altered Environment (PHAE) for a non-lab course on biodiversity conservation
    PHAE is a project to compare effects of landscape alteration intensities on plant biomass and diversity. This adaptation modifies the (adapted) modules for a non-lab course on conservation,...

    Keywords: erenNEONdiversitybiomass4DEE Frameworkecosystemsocioeconomic effects

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    Trail Camera Field Survey Module
    This QUBES module introduces high school students to the exciting world of field surveys using trail cameras. Designed for environmental science classes, the module offers a hands-on approach to...

    Keywords: graphsspecies richnessCommunity EcologymammalsMicrosoft Exceldichotomous keycamera trapsShannon diversity indexTrail CamerasPivotTables

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    Using Undergraduate Molecular Biology Labs to Discover Targets of miRNAs in Humans
    In this lesson, we describe an easily adaptable lab module that can be used in existing undergraduate molecular biology lab courses to conduct authentic scientific research, published in CourseSource

    Keywords: molecular biologybioinformaticsNIBLSEgene regulationmicroRNAsgene expressionCourseSourcemiRNA

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    380

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    CRISPR Gene Editing: Designing the gRNA and Donor Template
    In this adaptation, students learn how CRISPR/Cas9 is used in bacterial immunity and gene editing. Students create both a gRNA target and a donor template to edit a gene. Mutations can be from the...

    Keywords: geneticseducationcell biologymolecular biologymutationStem cellsstructure-functionmolecular visualization and analysis3D protein structure /function analysisCRISPR/Cas9crisprDNA mutationPiwiPDBMolecular Case StudyPiwi Matters

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    Quantifying and Visualizing Campus Tree Phenology
    This lesson, published on CourseSource, enables collaborative teams to collect, quantify, and analyze observable seasonal changes in nature.

    Keywords: ecologyBiodiversityphenologyplant biologyCourseSource

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    Learn Biological Sciences and Chemistry through cellular transport and concentration ( online and hands-on)
    Osmosis is a process by which by which solvent move from a region of lower solute concentration to region of higher solute concentration through a semi-permeable membrane. Cells utilize the process...

    Keywords: statisticsdata analysisbiologycell biologyconcentrationskillscellchemistryOsmosisSpectrophotometersolutionsolutesolvent

    454

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    Turning ecological research into engaging online modules for undergraduates through Gala/OCELOTS
    Learn how to create and implement online modules in tropical ecology for undergraduates. In an NSF-funded network, researchers and specialists in 4DEE, pedagogy, interactive data tools, and media...

    Keywords: tropical biologyOCELOTSLDC2023

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    Instructor Guide: Integrating Project Leadership, Artificial Intelligence, Simulation and Google Tools to Understand Regulation of Gene Expression with the Lac Operon and Lactase Gene
    Scientific leadership and current artificial intelligence (AI) skills are important skills to be included in the course curriculum. Together or individually, these skills can enhance knowledge,...

    Keywords: Resources @ HHMI - BioInteractivebiologymolecular biologygenomicsArtificial Intelligencegene expressionleadershipgroup worklactosegoogle toolsSeniorPhET SimulationLactase

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    Teaching RNAseq at Undergraduate Institutions: A tutorial and R package from the Genome Consortium for Active Teaching
    This lesson plan was created to teach RNAseq analysis as a part of GCAT-SEEK network. It is provided here, both in finished form and with the modifiable source code, to allow flexible adaptation to...

    Keywords: statisticsR programming languagebioinformaticsNIBLSERNAseqgene expressionCourseSourcecomputer programming

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    525

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    Microbiome Analysis with Oxford Nanopore 16S amplicon sequencing data
    The resource is a brief description of an analysis pipeline for microbiome analysis of Oxford Nanopore 16S amplicon sequence data. We tested the Kraken 2 and Krona pipeline from nanogalaxy with...

    Keywords: microbiome analysis toolNanopore

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    Geoscience Methods and Resources for K-5 Pre-Education Majors
    : Exploring Geoscience Methods was an excellent capstone experience for Elementary Education Majors. The class I used this module with was 24 students of various backgrounds and academic...

    Keywords: geneticsvideosQUBESecologyResources @ HHMI - BioInteractiveMathematical Biologycalculusjavaorganismal biologyquantitative biologybioinformaticsneurosciencegenomicscancerSecondaryyoutubemicrobiomeFaculty Mentoring NetworksalamanderCapture mark-recaptureAudience level - Introductory UG - majorsAudience level - Introductory UG - non-majorsecosystemsgenetic basis of diseasebiology of cellshuman reproductionfood chainIntroduction to Modelingrandom number generatorPost-secondaryLower DivisionPossible TasksModeling ProjectBuildCompareEvaluateexponential decayrecursionabsorptionelimination

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    BSL-4: Authorized Personnel Only
    National Center for Case Study Teaching in Science resource on the 2014 Ebola epidemic. This resource is also included in the NIBLSE Learning Resource Collection

    Keywords: infectious diseaseexperimental designbioinformaticsEbolaNIBLSECase It!PCRBLASTmultiple sequence alignmentPublished in National Center for Case Study Teaching in Sciencepolymerase chain reactionfebrile illnessvirusELISAenzyme linked immunosorbent assayfilovirusAfrica

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    A CURE in traits and species distributions: Reproductive modes, range sizes, and natural history collections
    This course-based undergraduate research experience (CURE) focuses on developing hypotheses about how traits influence the range sizes of species. Topics with substantive content include symbioses,...

    Keywords: Evolutionbiostatisticsecologynatural history collectionsSymbiosisspecies distributionsherbariumplant functional traitsLichenReproductive biologyAppalachian mountains

    2020

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    810

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