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Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    CyVerse Tutorials for NEON Data Science Institute 2018
    Resource for conducting data intensive research on CyVerse
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    A Critical Guide to the PDB
    This Critical Guide in the Introduction to Bioinformatics series provides a brief outline of the Protein Data Bank – the PDB – the world’s primary repository of biological macromolecular structures.

    Keywords: NIBLSEGOBLETInstructorResources

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    2004-Hill-Lozowski-Sampson-Experiments on ice spikes and a simple growth model
    We observed ice-spike growth using time-lapse digital photography, using two water types in two different containers.

    Keywords: iceice spikebulk heat transfermass conservation

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    Citations
    Published Avida-Ed article

    Keywords: EvolutioncurriculumSelectionDigital Organisms

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    Mysterious Occurrences Instructors Notes
    Answer Key associated with Mysterious Occurrences Module

    Keywords: digital resourcesBiodiversityconservation sciencePlant Resilience

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    Chapter 8: Comparing two means: the t-test
    Biostatistics Using R: A Laboratory Manual was created with the goals of providing biological content to lab sessions by using authentic research data and introducing R programming language....

    Keywords: biostatisticsR programming language

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    BIOME Avida ED Report video - YouTube
    Avida-ED is a digital evolution software program that allows students to ask questions and test hypotheses related to evolutionary concepts. Our working group explored how to incorporate Avida-ED...
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    Faculty Mentoring Networks: Community Professional Development for the Digital Age
    Poster for BioQUEST Summer Workshop 2020. What is an FMN? What is it like to be in one? What are the benefits?

    Keywords: fmn

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    Faculty Mentoring Networks: Community Professional Development for the Digital Age
    Poster for BioQUEST Summer Workshop 2019 What is an FMN? What is it like to be in one? What are the benefits?

    Keywords: fmn

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    Cleaning Biodiversity Data: Excel
    Access and clean an open source polar bear dataset using Excel.

    Keywords: data in the classroombiodiversity informaticsData cleaning

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    Communicating with Data: Digital Data Resources
    Students access, clean, configure, and standardize a dataset and create a relevant and scientifically valid data visualization to communicate science.

    Keywords: data in the classroomdata visualizationdigital resourcesbiodiversity informaticsbiodiversity collections

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    Electronic Lab Notebooks: Options for Building Data Management and Quantitative Reasoning Skills
    Presentation on Electronic Notebooks and Lab Archives given at the 2019 BioQUEST & QUBES Summer Workshop

    Keywords: 2019 QUBES/BioQUEST Summer Workshopelectronic notebookselectronic lab notebookslab archives

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    Calling Bull: Data Reasoning in a Digital World
    "So, the aim of this course is to help students navigate the bullshit-rich modern environment by identifying bull seeing through it, and combating it with effective analysis and argument."

    Keywords: data scienceinformation literacydata literacyethicscallin bullcalling bull

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    Use of PeerWise - an open digital question authoring tool
    Session on PeerWise presented at BioQUEST Workshop 2018

    Keywords: Summer Workshop 2018

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    Reaching Across Boundaries: Building Relationships, Sharing, & Learning Online
    Presentation given as part of a Minisymposium at BEER 2015.

    Keywords: social mediaCommunities of Practiceonline learning communities

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    Using genomic data and machine learning to predict antibiotic resistance: a tutorial paper
    Antibiotic resistance is a global public health concern. Bacteria have evolved resistance to most antibiotics, which means that for any given bacterial infection, the bacteria may be resistant to...

    Keywords: Tutorialmachine learningantibiotic-resistanceArtificial Intelligence

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    CRISPR in the Classroom Network - Bringing CRISPR-Cas9 technologies to the undergraduate classroom: an undergraduate instructors' network (RCN Introduction)
    Our RCN-UBE seeks to develop a national network for the development and implementation of experiential-based course modules for undergraduates centered around CRISPR-Cas9 technology through...

    Keywords: RCN-UBE Introduction

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    How to Design a Classroom Activity that Integrates 3D Print Models with Active Learning
    Student exploration of relevant physical models can deepen knowledge of course material. In this guide we describe a method by which instructors can integrate 3D printing technology with an...

    Keywords: active learning3D print modelsclassroom jigsaw

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    NEON_PDSI
    Users access and manipulate drought data and visualize these data to learn about historical drought patterns.

    Keywords: Palmer Drought Severity Index

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    statsTeachR
    statsTeachR is an open-access, online repository of modular lesson plans, a.k.a. "modules", for teaching statistics using R at the undergraduate and graduate level.

    Keywords: statisticsmodulecase studytextbookSimulationscurriculumResources @ ICB3 - statsTeachRin-class activityproblem set

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