You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Workshop Report: Summer 2020 Virtual CRISPR in the Classroom
    As innovations and developments in genome editing technologies using CRISPR-Cas systems progress, the need to disseminate relevant knowledge and build skills among the next generation of young...

    Keywords: geneticscrisprGenome Analysisgene editingbacterial immunity

    1410

    views

    186

    downloads

    0

    comments

    0

    adaptations

    Lizard cold tolerance and extreme weather events: a scientist spotlight featuring Dr. Shane Campbell-Staton
    Students interpret experimental and observational data about patterns in cold tolerance in the green anole. They reflect on the experience and identity of the lead researcher based on a video...

    Keywords: climate changeNatural Selectionenvironmental variationphenotypic plasticityacclimationenvironmental conditions

    1110

    views

    681

    downloads

    0

    comments

    0

    adaptations

    Understanding Frameshifting
    This module contains activities to help students understand the biology of programmed translational frameshifts (PTFs) in phages, how to identify PTFs, and how to annotate them.
    856

    views

    738

    downloads

    0

    comments

    0

    adaptations

    Phage Comparative Genomics Lab Manual
    A lab manual containing detailed instructions for several bioinformatics tools (dot plots, Phamerator maps, phylogenetic trees, and gene content similarity), all of which enable students to perform...

    Keywords: phageCUREcourse-based research experiences (CUREs)Comparative genomicsSEA-PHAGES

    1409

    views

    593

    downloads

    0

    comments

    0

    adaptations

    Student and Faculty Tools for Generating High-Quality Phage Annotations
    Phage genome annotation requires collaboration between faculty and their student research team. This set of resources provides tools to assist both students and faculty in the evaluation and...
    1056

    views

    1119

    downloads

    0

    comments

    0

    adaptations

    Understanding Gene Prediction Programs
    Introduces students to the key biological concepts underlying computational gene prediction. Outcomes include ability to analyze and evaluate output of gene prediction programs, and reflect on...

    Keywords: Genome annotationSEA-PHAGESgene predictiongenemarkcoding potentialcodon biassix frame translation

    1141

    views

    1285

    downloads

    2

    comments

    0

    adaptations

    Exploring the Ecology of Gorongosa
    Students learn about bottleneck events, population demographics and growth, ecological niches and competition, food chains/webs and ecological disturbances through past and current data on...

    Keywords: Community Ecologypopulation ecology

    1909

    views

    3275

    downloads

    0

    comments

    0

    adaptations

    Laboratory Math
    Explanations and demonstrations on how to use mathematical equations for various laboratory purposes, including those specific to SEA-PHAGES (such as phage titer calculations) and those that are...
    1165

    views

    14566

    downloads

    0

    comments

    0

    adaptations

    HHMI SEA-PHAGES and GENES: Course-based UREs Designed for All
    The HHMI Science Education Alliance (SEA) program supports a community of faculty members and institutions embed research as a fundamental component of early undergraduate science curricula.

    Keywords: course-based research experiences (CUREs)SEA-PHAGES

    1360

    views

    262

    downloads

    0

    comments

    0

    adaptations

    Writing Microbiology Resource Announcements (MRA)
    This resources provides a framework for students to write a Microbiology Resource Announcement, collaboratively.

    Keywords: phageBioinformatics and GenomicsGenome announcementmanuscriptMRA

    550

    views

    343

    downloads

    0

    comments

    0

    adaptations

    Do urban yards serve as a refuge for native land snail species?
    This module contains a series of take-home activities to prepare students to analyze their own dataset collected in lab.

    Keywords: urban ecosystemsrefugia from habitat lossJMP

    927

    views

    97

    downloads

    0

    comments

    0

    adaptations

    QUBES – A virtual synthesis center catalyzing change in undergraduate quantitative biology education
    Presentation about QUBES given at HHMI Constellation Meeting: Advancing science students mastery of quantitative skills.

    Keywords: quantitative biology education

    1077

    views

    157

    downloads

    0

    comments

    0

    adaptations

    Exploring the population dynamics of wintering bald eagles through long-term data
    Exploring long-term population data through graphical and statistical means Practice module included in Teaching Issues and Experiments in Ecology (TIEE) Volume 7

    Keywords: Resources @ ESA - TIEEcase studypopulation ecologyendangered speciesconservation biologymigration ecology

    1518

    views

    658

    downloads

    0

    comments

    0

    adaptations

    Visualization: Quantitative reasoning via image analysis, networks, topology, generative models, and 3D rendering
    Resource from the 2015 BioQUEST Summer Workshop
    1153

    views

    58

    downloads

    0

    comments

    0

    adaptations

    DataNuggets Resources
    DataNuggets Resources

    Keywords: DataNuggets

    2175

    views

    276

    downloads

    0

    comments

    0

    adaptations

    OCELOTS - A Network for Facilitating Online Content for Experiential Learning of Tropical Systems (RCN-UBE Introduction)
    The OCELOTS Network connects tropical biology researchers with specialists in pedagogy, 4DEE, software, and media to create and implement research-based online modules in tropical biology,...

    Keywords: RCN-UBE Introduction

    303

    views

    132

    downloads

    0

    comments

    0

    adaptations

    Mock Drug Activity Enhances Student Learning About the Challenges of HIV/AIDS Therapy
    While traditional didactic coursework is important for learning about the scientific aspects of HIV/AIDS, it is difficult to convey social aspects of the epidemic. Due to effective drug therapies,...

    Keywords: drug resistanceRetrovirusViral replication

    1115

    views

    135

    downloads

    0

    comments

    0

    adaptations

    Understanding the Importance of Microtubules in Normal Cell Division: Chemotherapy Connection
    In introductory courses, students learn about microtubules as important structures but may not engage in a hands-on experience to localize microtubules themselves or to learn about their connection...

    Keywords: cancerCell DivisionimmunofluorescenceMicrotubulesAntibodies

    983

    views

    64

    downloads

    0

    comments

    0

    adaptations

    Introducing PHAGES Students to Primary Literature
    The ‘Introducing PHAGES Students to Primary Literature’ set of teaching resources offers faculty 2 distinct sets of teaching resources for introducing students to scientific literature in the...
    1260

    views

    1766

    downloads

    0

    comments

    0

    adaptations

    Terrestrial Trophic Cascades & Population Structure
    In this activity, students will use data from natural parks to examine trophic cascades.

    Keywords: case studyBiodiversityplantsResource Typetrophic cascadesnational parks

    1282

    views

    272

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search