You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Introduction to nucleotide sequence analysis and protein modeling in MEGA and PyMol using coronavirus SARS-CoV-2
    Introduction into computational approaches in phylogeny and protein modeling based on coronavirus SARS-CoV-2 (caused COVID-19 pandemic). Two self-guided tutorials for standard lab classes of 2.5...

    Keywords: phylogeneticsundergraduate educationbioinformaticsNCBICOVID19coronavirusMEGAPyMolvirtual labPDBprotein modelingSARSSARS-CoV

    1204

    views

    629

    downloads

    0

    comments

    0

    adaptations

    Phage Comparative Genomics Lab Manual
    A lab manual containing detailed instructions for several bioinformatics tools (dot plots, Phamerator maps, phylogenetic trees, and gene content similarity), all of which enable students to perform...

    Keywords: phageCUREcourse-based research experiences (CUREs)Comparative genomicsSEA-PHAGES

    1470

    views

    609

    downloads

    0

    comments

    0

    adaptations

    Will You Find This Humerus? Homology Lab
    Students will compare and contrast the morphology of vertebrate forelimbs, and will use this knowledge to draw conclusions about their common ancestor and descent with modification.

    Keywords: Evolutionbiologyidigbionatural history collections3D modelsVertebrate MorphologyoVerthomologous structuresWWISE

    983

    views

    650

    downloads

    1

    comments

    0

    adaptations

    Yeti or not: Do they exist?
    Through this 4-part bioinformatics case study, students will be led through the forensic analysis of putative Yeti artifacts based on published findings.

    Keywords: case studybioinformaticsNIBLSEBLAST12S sequencingYeti

    1692

    views

    1768

    downloads

    0

    comments

    0

    adaptations

    QUBES: An education gateway for accelerating undergraduate biology education reform
    Poster about QUBES as an education gateway presented at the 2020 Partners@QUBES Leadership Summit.

    Keywords: cyberinfrastructureeducation gateway

    1367

    views

    346

    downloads

    0

    comments

    0

    adaptations

    CC-CURE Report Out from the BIOME 2020 Institute
    This resource includes a collection of videos describing some of the outcomes from the Interdisciplinary and Cross Course CURE working group.

    Keywords: course-based undergraduate research experience

    1192

    views

    476

    downloads

    0

    comments

    0

    adaptations

    Social Justice & Community Change QUBES Faculty Mentoring Network 2021
    In this Faculty Mentoring Network we will examine the historical practice of redlining, and how social and economic factors over the last century have created disparities in environmental...

    Keywords: social justiceair qualityBIOME 2020redlining

    1333

    views

    391

    downloads

    0

    comments

    0

    adaptations

    Bioinformatics: the Power of Computers in Biology – a Practical Guide
    This Practical Guide in the Bringing Bioinformatics into the Classroom series introduces simple bioinformatics approaches for database searching and sequence analysis.

    Keywords: NIBLSEGOBLET

    1073

    views

    273

    downloads

    0

    comments

    0

    adaptations

    Intro to Data Types and Graphing Lab
    This is the third lab in an Introductory Physical Geography/Environmental Studies course. It introduces students to different data types (qualitative vs quantitative), basic statistical analyses...
    2218

    views

    2475

    downloads

    0

    comments

    0

    adaptations

    Transforming your CUREs with SENCER
    Presentation on Science Education for New Civic Engagements and Responsibilities given as part of the 2020 BioQUEST & QUBES BIOME Institute: Cultivating Scientific Curiosity.

    Keywords: course based undergraduate research experiencesCURESENCERcivic engagement

    1250

    views

    217

    downloads

    0

    comments

    0

    adaptations

    What Moves You?
    Using various bone segments to create joints that will explain planar movement and then develop a mechanical model of different joint types that will allow certain movement in a robotic unit.
    890

    views

    386

    downloads

    0

    comments

    0

    adaptations

    Using Linear Regression to Explore Environmental Factors Affecting Vector-borne Diseases
    In this activity students will use linear regression to analyze real data on vector-borne diseases and explore how environmental factors such as climate change or population density influence the...

    Keywords: ecologygraphingmicrobiologyqbccUnderstanding ratesCreate graphsInterpret graphsinterpret tablesConcepts in Statistics

    2609

    views

    4589

    downloads

    0

    comments

    1

    adaptations

    The Hidden Kingdom: Island Biogeography with Fungi
    In this activity, students will explore a dataset of fungi dispersal capabilities and colonizing success to test the predictions of island biogeography theory.

    Keywords: Island biogeographyfungi

    1297

    views

    1022

    downloads

    0

    comments

    0

    adaptations

    Anti-bias Education Puppet Plays
    Nature provides science content for teacher preparation certification programs and the backdrop for puppet plays used as a springboard for teaching the NAEYC's four goals of Anti-bias...

    Keywords: educationcollectionsmuseumidentitydiversityNatureearly childhoodjusticepuppetplaysnature-basedanti-biasactivism

    1106

    views

    906

    downloads

    0

    comments

    0

    adaptations

    Integrating digitized biodiversity data exploration into the undergraduate biology curriculum
    Poster on the Biodiversity Literacy in Undergraduate Education (BLUE) project presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity

    Keywords: Biodiversitybiodiversity collectionsBLUEbiodiversity literacy

    973

    views

    206

    downloads

    2

    comments

    0

    adaptations

    CyVerse: Scalable Image Informatics
    Poster on cyberinfrastructure for the machine learning ere presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity

    Keywords: image analysisundergraduate researchmachine learningCyVerse

    1104

    views

    268

    downloads

    3

    comments

    0

    adaptations

    Incubators: Building community networks and developing open educational resources to integrate bioinformatics into life sciences education
    To efficiently and effectively integrate bioinformatics instruction into undergraduate life science curricula, educators would benefit from open access, high-quality learning resources (LRs) for...

    Keywords: bioinformaticsNIBLSEincubatorsLife Science

    994

    views

    215

    downloads

    1

    comments

    0

    adaptations

    Louse Genetics, Genomics, and Gene Function...Oh My!
    In this module, students will be investigating a louse gene with an unknown function to determine if it might be important in the evolution of the louse ecomorphs.

    Keywords: parasitesgenomicsgene sequence analysisFunctional Genomics

    1610

    views

    669

    downloads

    0

    comments

    0

    adaptations

    SEIR simulation activity for flattening the curve
    This is a short exploration activity to introduce SIR and SEIR models without explicitly introducing differential equations. It utilizes the R package EpiDynamics and students can run the...

    Keywords: RRStudioInfectious Disease ModelingSIR modelsSIRseircovidcoronavirus

    2214

    views

    610

    downloads

    0

    comments

    0

    adaptations

    Following the Data - PowerPoint Addition to Module
    This PowerPoint presentation guides instructors and students through the key background information for the module.
    1114

    views

    456

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search