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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Let me in: Interpreting graphs of parasite infection in red blood cells
    The goal of this activity is to familiarize students with reading graphs, to think about how cells are different from one another and how parasites can take advantage of cell surface markers to...

    Keywords: fmnCellsStem cellsmalariarepresentation in STEMBioGraphI graph Interpretationcell sortinginfection efficiencycell surface proteinscell recongitionred blood cells

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    A Structured Inquiry-Based Module for the Undergraduate Cell Biology Laboratory That Teaches Fundamental Concepts of Cell Differentiation
    Pedagogical research in science education has shown that students effectively learn science by doing science. As a result, there is increased interest in bringing research-like experiences into the...

    Keywords: fluorescence microscopygene expressionpolymerase chain reactionCell Structurecell culturewestern blottingdifferentiationreverse transcription

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    Exploring Microbial Diversity: An Interactive In-Class Assignment for Biology and Microbiology Courses
    This interactive assignment engages students in a hands-on exploration of microbial diversity and the importance of microbes in ecosystems. Designed for General Biology II and Introduction to...

    Keywords: Microbiology EducationMicrobial DiversitymicrobiologyEcological Society of Americaecology educationresearch-based classroom instruction4DEE Framework

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    Teaching Thermal Physiology of Reptiles and Amphibians to Undergraduate Students
    This module contains materials and activities for teaching undergraduate students about the thermal physiology of reptiles and amphibians. The module begins with an interactive lecture introducing...

    Keywords: animalecologyconservationclimate changeHerpetologyUndergraduatephysiologyTemperature ChangeAmphibans and ReptilestemperatureMetabolismsnakesdigestive systemreptileslizardcrticial thermal maximumthermoregulation

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    Implementing an online module about impacts of pollution from gold mining in an undergraduate ecology course in the Pacific Northwest, USA
    Students learn about biomagnification of toxins, build skills in graphical interpretation, and apply field methods to tackle complex issues about small-scale gold mining in the Peruvian Amazon....

    Keywords: food websmercury biogeochemistryBioaccumulationbiomagnificationPeruvian Amazon

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    Instructions for access to BioGraphI PrePost-Lesson Student Survey - Google Docs
    This document contains instructions for curriculum developers to invite students to complete a survey before and following their participation in curriculum produced by the Biologists and Graph...

    Keywords: assessmentgraph interpretationeducation researchdata literacylearning outcomeslearning objectivesRole ModelsBioGraphIBioGraphI FMNcounterstereotypical scientist

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    BioGraphI Student Learning Outcomes Assessment Tool - Google Docs
    This document contains the student learning outcomes that guide the development of curriculum produced by the Biologists and Graph Interpretation (BioGraphI) Network and the survey instrument used...

    Keywords: assessmentgraph interpretationeducation researchdata literacylearning outcomeslearning objectivesRole ModelsBioGraphIBioGraphI FMNcounterstereotypical scientist

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    The Great Petunia Carnage of 2017: A Clicker Case Study Using Petunias to Describe the Effect of Genetic Modification on the Biochemistry of Flower Color and Phenotype in Plants
    In this single class period case study, students examine the difference between genotype and phenotype by studying the mechanisms by which commercially available petunias have been bred to have...

    Keywords: case studyGenetic ModificationsBiochemistry of Flower ColorGMO regulationsGenotype-Phenotype Connections

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    Learning the Landscape: An Active and Applied Lesson on Landscape Ecology for General Ecology Courses
    Landscape ecology is an important subtopic of ecology. As a field, it is inherently interdisciplinary and provides opportunities to teach not only content, but transferable ecological and...

    Keywords: landscape ecologyspatial scaleecosystem managementHabitat fragmentation

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    Implementing an online module about tropical seed dispersal and restoration in an undergraduate ecology course in the Pacific Northwest, USA
    This “Spreading Seeds” case study introduces students to ecology of seed dispersal mutualisms, and their importance for forest restoration. The implementation plan teaching notes, and associated...

    Keywords: mutualismRestoration Ecologyspecies interactionHabitat fragmentationSeed dispersalforest recovery

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    Implementing an online module about interpreting sound in a coral reef for an undergraduate marine biology course in Indonesia
    Students engage in interpreting sound, exploring the diversity of sounds in a coral reef in Indonesia, and relating coral reefs to climate change. This implementation incorporated principles of...

    Keywords: fishcoral reefssoundscapestropical ocean

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    Using Constructed Response Questions on High-Stakes Assessments in Large Classes With Limited Support
    Large lecture courses often rely heavily, and sometimes exclusively, on Multiple Choice (MC) exams to assess student learning. Constructed Response (CR) questions, in which students generate their...

    Keywords: assessmenttestexamLarge classconstructed responseshort answerscoring

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    Long Term Self-assessment Bates College DCS 105
    This is a long-term self-assessment tool for students participating in the Bates College course DCS 105 Calling Bull: Data Literacy and Information Science. .

    Keywords: datareflectionself-assessmentCalling BullshitLong Term

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    DCS 105 F24 Reading List Bates College
    The reading list for DCS 105 Calling Bull: Data Literacy and Information Science is curated to enhance students' understanding of misinformation and its impact on society.

    Keywords: datalearningmisinformation#readinglistDCS 105Calling BullshitBates College

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    Implementing an online module about measuring carbon stocks in an undergraduate Earth Science course
    In this implementation of a case study in which high technology was used to measure carbon stocks in a tropical forest, earth science students in this 4-year college in Oklahoma applied concepts...

    Keywords: climate changephotosynthesisbiomasscarbon cyclegreenhouse gas effect

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    Using Science Education Gateways to Improve Undergraduate STEM Education: The QUBES Platform as a Case Study
    This paper describes BioQUEST's vision for the QUBES platform as an engine for science education reform. 

    Keywords: Science Education Gateway

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    Using Raw Sequence Data to Analyze Tumor Suppressor Mutations
    Learning to identify DNA sequence variants from raw sequencing data (electropherograms) is a basic molecular biology skill with applications to basic research and clinical practice. Yet learning to...

    Keywords: bioinformaticsmutationDNAgenomic visualizationparts of a geneclinical consequencesraw data

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    Evaluation of DEIJ in Lectures of Junior Year Science Undergraduate Course
    Diversity, equity, inclusion, and social justice, DEIJ, is important for both students and faculty as they improve learning outcomes and elicit professional competency respectively. DEIJ...

    Keywords: stempedagogyArticleUndergraduateOpen Sourcescienceevaluationneurobiologythe role of active learning in retention and engagementFacultyAnalysismethod#DEI-J-ADEIJinterdisplinaryjunorlearning spacesadditional support learning systemenhancement

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    Calling Bullshit DCS 105 Bates College Data Visualization Activity Slides
    This is a slide deck containing all in-class data visualization activity slides for the course DCS 105 - Calling Bullshit at Bates College.

    Keywords: datadata visualizationhands-onbatescalling bullDCS 105

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    Fish, forests, and phosphorus: How do tropical fish, rainforest canopies, and volcanic groundwater inputs affect stream phosphorus cycling?
    Rainforest stream nutrient concentrations vary with groundwater source, and different stream fish species feed on aquatic and/or terrestrial prey. Explore how phosphorus cycling changes with stream...

    Keywords: nutrient cyclesBiogeochemistrykeystone speciesfood webFunctional Diversity

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