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Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Data Management using National Ecological Observatory Network's (NEON) Small Mammal Data with Accompanying Lesson on Mark Recapture Analysis
    Students use small mammal data from the National Ecological Observatory Network to understand necessary steps of data management from data collection to data analysis by estimating small mammal...

    Keywords: data managementspreadsheetssmall mammals community dynamicsNEONCapture mark-recaptureResource TypeNational Ecological Observatory Network

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    SCORE - Network for an Open and Accessible Biology Education: The promise of equity and the challenge of sustainability (RCU-UBE Introduction)
    The mission of the SCORE-UBE Network is to help our Network participants achieve their sustainability and broader impact goals by working together to amplify the value and reach of open education...

    Keywords: RCN-UBE Introduction

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    HITS: A network to create inquiry-based case studies that make high-throughput approaches and discovery accessible
    Poster on the work of the NSF-funded High-throughput Discovery Science & Inquiry-based Case Studies for Today’s Students (HITS) Research Coordination Network. Presented at the 2021 BIOME Institute.

    Keywords: case studieshigh-throughputHITSHigh-throughput Discovery Science & Inquiry-based Case Studies for Today’s Students2021 BIOME

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    Comparative Landscape Ecology Project using RStudio Cloud (Project EDDIE)
    This modified version incorporates the use of RStudio Cloud for easier remote instruction, and culminates in an exploratory project comparing the influence of patch metrics on vegetation health for...
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    Using the QUBES platform and NEON faculty mentoring networks to build, adapt, and publish data-driven open educational resources
    This video provides an overview of the NEON Data Education Faculty Mentoring Networks and an example of published QUBES resource implementation in the classroom.

    Keywords: NEON FMN

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    NEON Data in the Classroom: Quantifying Spatial Patterns
    Students build on fundamental concepts of spatial patterns and combine this knowledge with the open-data from the National Ecological Observatory Network to quantify spatial autocorrelation and...

    Keywords: RR Markdownlandscape ecologygroup-neon2018spatial statisticsfractalsrasters

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    Teaching RNAseq at Undergraduate Institutions: A tutorial and R package from the Genome Consortium for Active Teaching
    This lesson plan was created to teach RNAseq analysis as a part of GCAT-SEEK network. It is provided here, both in finished form and with the modifiable source code, to allow flexible adaptation to...

    Keywords: statisticsR programming languagebioinformaticsNIBLSERNAseqgene expressionCourseSourcecomputer programming

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    Antibiotic Resistance Genes Detection in Environmental Samples
    Our aim is to provide an authentic research experience for undergraduate students in a variety of biology courses through collaboration between a four-year university and a community college. This...

    Keywords: geneticsenvironmentmicrobiologyUndergraduateantibiotic-resistancePCRgel electrophoresisauthentic inquiry

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    Learning Journal Assignment on Biofilms
    This is a learning journal assignment with constructive response questions on Biofilms which undergraduate students can complete with aid of reading a research article and listening to a podcast.

    Keywords: educationPodcastmicrobiologygenomicsUndergraduateAnalysisBioflimsLearning Journal Assignmet

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    Turning ecological research into engaging online modules for undergraduates through Gala/OCELOTS
    Learn how to create and implement online modules in tropical ecology for undergraduates. In an NSF-funded network, researchers and specialists in 4DEE, pedagogy, interactive data tools, and media...

    Keywords: tropical biologyOCELOTSLDC2023

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    YEAH - Youth Environment Alliance in Higher Education (RCN-UBE Introduction)
    The Youth Environment Alliance in Higher Education (YEAH) Network links academic institutions together to provide integrated knowledge that empowers students to address complex global environmental...

    Keywords: RCN-UBE Introduction

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    Mockumentary: Parasitology Research
    A new parasite is decimating the endangered purple platytoad population! Follow scientists from the Host-Parasite Interactions group as they try to save the purple platytoad through a...

    Keywords: parasitesecological parasitologyclinical diagnostic parasitologymockumentarytranslational research

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    Are you teaching biostatistics with R? Suggestions to help you as work with your students.
    Teaching students how to code and analyze data in R is important for the fields of biology and ecology. Olivia Tabares and the Ecological Forecasting Education Working Group created this resource...

    Keywords: biostatisticsecologybiologyR code

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    An Introduction to the R Programming Environment
    An online module introducing students and biologists to R, published in American Phytopathological Society

    Keywords: epidemiologyRecologyR programming languagebioinformaticsprogrammingplant biologyNIBLSEplant pathology

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    Collections Education Coffee Break Series Episode One: What Can We Learn From an Insect Specimen Label?
    In the first episode of the Collections Education Coffee Break Series we speak with Anne Basham from SCAN and the Biodiversity Outreach Network. ...

    Keywords: natural history collectionsinformal science learninginformal educationMulti-Modal learningmultiliteracyspecimen baseddigitizationdigital specimen

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    Highlights of the Hewlett-Foundation Grant Award to Bates College (February 2021)
    End-of grant highlights of the Hewlett-Foundation grant award to Bates College: Supporting more equitable and sustainable open education across STEM
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    HF Bates Mid Year Progress Report
    Mid-year highlights of the Hewlett Foundation Grant Award to Bates College: Supporting more equitable and sustainable open education across STEM

    Keywords: STEM Evaluation

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    Backyard Beetles + Pollinators Lab for BIO 3400 Ecology at Greensboro College
    This contains Dr. Sandra Cooke's modifications to the EREN-NEON FLP Backyard Beetles + Pollinators project developed for BIO 3400 Ecology, an upper level course taught in person at Greensboro...

    Keywords: NEONNational Ecological Observatory Network

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    Mosquito Surveys Along Anthropogenic Impact Gradients: EREN-NEON Flexible Learning Project
    This project explores the role of human land use and other environmental factors that affect native and invasive mosquito species distributions and the diseases that they can vector.
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    Understanding COVID-19 Biology to Design a Vaccine - Ethics supplement
    The adaptation to Understanding COVID-19 Biology to Design a Vaccine entails two ethics supplements. The first supplement addresses the use of off-label drugs in the pandemic (or other situation)....

    Keywords: bioethicsBLASTprotein structure modelingmolecular visualization and analysisethicsCOVID19PDB

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