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    Analysis of Amylase Activity
    This lab is an exploration of enzyme function and the effects of environmental conditions on the activity of the enzyme amylase. The lab utilizes analytical and graphing skills to assess enzyme...

    Keywords: data analysisintroductory biologyconcentrationgraphinglinear equationsBiochemistryscientific methodstandard curveenzyme functionMicrosoft ExcelInterpreting GraphsenzymesqbccCreate graphsInterpret graphsSolving Equations and Inequalitiesinterpret tablesAmylaseAlpha-amylaseEnzyme activityMaltoseDNS assayAbsorbancelab reportspectrophotometryregression linemanipulating equationsline of best fitgraphing by hand

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    Lesson VII - Synteny
    The lesson teaches about synteny or the order of genes along a chromosome, which is useful for looking at orthologous genes between two species or strains.

    Keywords: Bioinformatics Education

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    Module 1: Introduction to the Genome Browser: What is a Gene?
    This lesson introduces the University of California Santa Cruz genome browser to students, walking them through some of the key features so that it can be used for analysis of gene structure.

    Keywords: geneticsbioinformaticsGenome BrowserSimilarity searchesExonsIntronsEvidence TrackStart CodonStop Codon

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    2005

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    Diseasebots HEXBUG Lab
    This module explores the effects of host density on contact rates and transmission of pathogens using a hands-on experiment with HEXBUG robots.
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    4-039-FallingDarts-ModelingScenario
    we develop, solve, and analyze a second order differential equation model for free fall incorporating air resistance. Students solve the model using two methods -- reduction of order and...

    Keywords: optimizationresistanceterminal velocitymuzzle velocitydrag coefficientfree fallair drag

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    Quantitative Modeling by Biology UnderGraduate Students
    Workshop for biology faculty at University of Houston on the QUBES and QM BUGS projects

    Keywords: QUBESQM BUGS

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    2012-Yuan_Yuan-A coupled plankton system with instantaneous and delayed predation
    We present two simple plankton population models: one has instantaneous predation, another has delayed predation.

    Keywords: phytoplanktonbifurcationorbitsherbivorous zooplanktoneffect of fishmaturation time delay

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    Factor Structure Assessment of the Students Support Needs Scale-Augmented for African-American STEM Students
    Poster on the impact of a performance pyramid-based peer-led learning community on course knowledge at a Historically Black University. Presented at the 2021 BIOME Institute.

    Keywords: modelingSTEM education2021 BIOMEfactor structure

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    Hemoglobin bioinformatics
    This is an introduction to bioinformatics using hemoglobin as an example. The worksheets introduce students to resources to explore the DNA, RNA and polypeptide linear structure with a brief...

    Keywords: bioinformaticsHemoglobinBLASTsickle cell diseaseMolecular Case StudyClustal OmegaMolCaseNet

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    SEIR simulation activity for flattening the curve
    This is a short exploration activity to introduce SIR and SEIR models without explicitly introducing differential equations. It utilizes the R package EpiDynamics and students can run the...

    Keywords: RRStudioInfectious Disease ModelingSIR modelsSIRseircovidcoronavirus

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    BLAST-HGT PROJECT
    Genome Solver modules were combined to make one project for students using tools within NCBI BLAST to explore phylogenetics and horizontal gene transfer from phage to Chlamydia.
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    1988-EY_Rodin-N_Taber-Yeast Growth Modelling in a Laboratory
    Modeling simple growth with some missing data and doing linear regression for parameter estimation in closed form solution of differential equation model and data.

    Keywords: regressionyeastgrowth

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    Trinity Washington University- A Pipeline in Paradise
    Trinity Washington University-Discovering Planet Earth (ENVS 101- An introductory science course designed for non-science majors, study "A Pipeline in Paradise" case. Students were divided to four...

    Keywords: case studypipeline

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    6-065-InternetPlatformUsers-ModelingScenario
    A model estimating the volume of users interacting through a two-sided Internet platform (allowing interaction of two types of users) will teach students how to analyze a 2-dimensional dynamical...

    Keywords: dynamicsflowconservedfixed pointscycletinternet platformdiverghenceJacobianattractingrepellingnodesstablesaddlespiral

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    2016-Simon_Malham-Differential_Equations_and_Linear_Algebra
    This is a nice set of notes on which a course can be based. There is ample material on first and second order, linear systems, and Laplace Transform methods for setting up and solving differential...

    Keywords: textbooklinear algebraLaplace transform

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    UDL Working Group- BIOME 2022 - Lightning Talk
    UDL Working Group from BIOME 2022's Lightning talk. They discuss what they did over the course of the semester.

    Keywords: working groupBIOME 2022

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    Introduction to NEON
    This is a presentation that provides an introduction to the National Ecological Observatory Network and the educational resources it provides for working with large ecological data.
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    2-001-NumericalMethodsComparisons-TechniqueNarrative
    This material teaches the basics of numerical methods for first order differential equations by following graphical and numerical approaches. We discuss the order of accuracy of the methods and...

    Keywords: Euler's methodimproved Euler's methodRK3 methodsRK4 methodsorder of accuracyabsolute errorCPU time

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    1-118-SolowEconomicGrowth-ModelingScenario
    Students construct and analyze the celebrated Solow-Swan model of economic growth theory. The project is divided into three sequential parts to teach students to understand, develop, and analyze a...

    Keywords: optimizationeconomicssteady stategrowthSolow-Swan modelcapitalproductionlaborGolden Rule of Economic Growth

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    NSF RCN-UBE SCORE Mid-Survey Findings
    Network findings for the SCORE Network Mid-Survey.

    Keywords: evaluationscoreSTEM Evaluation

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