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Robot vs. Disease: Using CellProfiler to model biomedical research in your classroom
15 Jun 2015 | Teaching & Reference Material | Contributor(s): Mark Bray
This resource has been updated - find the current version here: https://qubeshub.org/publications/315Date & Time:Saturday, June 13 @ 2PM & Sunday June 14, @2PMDescription: In this session, I will introduce the open-source and freely-available software package CellProfiler,...
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Quantitative reasoning: Interdisciplinary STEM 21st century reasoning modality
14 Jun 2015 | Teaching & Reference Material | Contributor(s): Robert Lee Mayes
This resource has been updated - find the current version here: https://qubeshub.org/publications/316Date & Time:Wednesday, June 17 @ 9AMDescription:The Next Generation Science Standards (NGSS 2013) and the Common Core State Standards for Mathematics (NGA 2010) call for improving...
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Undergraduate Research Experiences in Computational Science at a Community College
13 Jun 2015 | Teaching & Reference Material | Contributor(s): Tony Sena
This resource has been updated - find the current version here: https://qubeshub.org/publications/320We will present our experiences doing undergraduate research in the area of parallel computing and distributed systems on a multidisciplinary environment with STEM students. We show that...
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Visualization: Quantitative reasoning via image analysis, networks, topology, generative models, and 3D rendering
10 Jun 2015 | Teaching & Reference Material | Contributor(s): Sam S Donovan, John R Jungck
This resource has been updated - find the current version here: https://qubeshub.org/publications/321Additional resources for:"Visualization: Quantitative reasoning via image analysis, networks, topology, generative models, and 3D rendering" by John R. JungckDate and Time:...
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Avida-ED presentation: Context Dependent Fitness
07 Jun 2015 | Teaching & Reference Material | Contributor(s): Maren L Friesen, Andrew M Jarosz
Avida-ED exercise showing adaptation to contrasting resource environments illustrating that the fitness of different genotypes depends on the environment.
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Avida-ED presentation: Context Dependent Fitness
07 Jun 2015 | Teaching & Reference Material | Contributor(s): Maren L Friesen, Andrew M Jarosz
Avida-ED exercise showing adaptation to contrasting resource environments illustrating that the fitness of different genotypes depends on the environment.
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Avida-ED User Manual
07 Jun 2015 | Teaching & Reference Material | Contributor(s): Diane Blackwood
Basic User manual to use Avida-ED
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Agent-based and Individual-based Modeling: A Practical Introduction
03 Jun 2015 | Teaching & Reference Material | Contributor(s): Steven F Railsback, Volker Grimm
From the authors website: "We designed this book to fill the need for an introductory text on agent-based modeling for scientists, for use both in university courses (graduate or upper level undergraduate) and by people teaching themselves. The book is not specific to any particular...
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HHMI-AAMC Scientific Foundations for Future Physicians report
03 Jun 2015 | Teaching & Reference Material
The AAMC and HHMI convened a group of scientists, physicians, and science educators from small colleges, large universities, and medical schools around the United States to determine the most important scientific competencies required of students graduating from college prior to matriculating...
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A Quick Guide to Teaching R Programming to Computational Biology Students
03 Jun 2015 | Teaching & Reference Material | Contributor(s): Stephen Eglen
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/838An introduction from an experienced educator in teaching R to computational biology graduate students. Contains information that is relevant for the undergraduate classroom...
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A Quick Guide to Teaching R Programming to Computational Biology Students
03 Jun 2015 | Teaching & Reference Material | Contributor(s): Stephen Eglen
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/838An introduction from an experienced educator in teaching R to computational biology graduate students. Contains information that is relevant for the undergraduate classroom...
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Exploring generic scale-free networks
02 Jun 2015 | Teaching & Reference Material | Contributor(s): Winfried Just, Hannah Lea Callender, Drew LaMar
This module is a companion module to Module [[Resource(384)]]. Here we study in more detail networks that are generic for a given network size and a given exponent of a power-law degree distribution. We explore predicted structural properties of such networks both mathematically and with...
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Exploring generic scale-free networks
02 Jun 2015 | Teaching & Reference Material | Contributor(s): Winfried Just, Hannah Lea Callender, Drew LaMar
This module is a companion module to Module [[Resource(384)]]. Here we study in more detail networks that are generic for a given network size and a given exponent of a power-law degree distribution. We explore predicted structural properties of such networks both mathematically and with...
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Clustering coefficients
02 Jun 2015 | Teaching & Reference Material | Contributor(s): Winfried Just, Hannah Lea Callender, Drew LaMar
In this module we introduce several definitions of so-called clustering coefficients. A motivating example shows how these characteristics of the contact network may influence the spread of an infectious disease. In later sections we explore, both with the help of IONTW and theoretically,...
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Clustering coefficients
02 Jun 2015 | Teaching & Reference Material | Contributor(s): Winfried Just, Hannah Lea Callender, Drew LaMar
In this module we introduce several definitions of so-called clustering coefficients. A motivating example shows how these characteristics of the contact network may influence the spread of an infectious disease. In later sections we explore, both with the help of IONTW and theoretically,...
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Small-world models
02 Jun 2015 | Teaching & Reference Material | Contributor(s): Winfried Just, Hannah Lea Callender
Small-world networks are classes of networks that have both the small-world property and exhibit strong clustering. Two constructions of such networks are implemented in IONTW. Here we study, both theoretically and with simulation experiments, the structure of these networks and how it influences...
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Small-world models
02 Jun 2015 | Teaching & Reference Material | Contributor(s): Winfried Just, Hannah Lea Callender
Small-world networks are classes of networks that have both the small-world property and exhibit strong clustering. Two constructions of such networks are implemented in IONTW. Here we study, both theoretically and with simulation experiments, the structure of these networks and how it influences...
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BIO2010: Transforming Undergraduate Education for Future Research Biologists
25 May 2015 | Teaching & Reference Material | Contributor(s): Committee on Undergraduate Biology Education to Prepare Research Scientists for the 21st Century, Board on Life Sciences, Division on Earth and Life Studies, National Research Council
Biological sciences have been revolutionized, not only in the way research is conducted -- with the introduction of techniques such as recombinant DNA and digital technology -- but also in how research findings are communicated among professionals and to the public. Yet, the undergraduate...
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Vision and Change in Undergraduate Biology Education: A Call to Action
25 May 2015 | Teaching & Reference Material
This is the final report of a national conference organized by the American Association for the Advancement of Science with support from the National Science Foundation in an effort to show how the undergraduate biology education system needs to be improved: "Given the radical changes in the...
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BioRadiant
19 May 2015 | Software (On-site) | Contributor(s): Drew LaMar
Interactive statistics package using R and Shiny.