Outstanding Oaks: Quercus phenology at NEON sites

09 Oct 2018 | Software (On-site) | Contributor(s): Jackie Matthes

This app visualizes data from the National Ecological Observatory Network (NEON) observations of oak phenology at three different sites.

Introduction to Probability, Statistics, and Random Processes

07 Nov 2016 | Teaching & Reference Material | Contributor(s): Hossein Pishro-Nik

This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/896Check out the textbook called Introduction to Probability, Statistics, and Random Processes by Hossein Pishro-Nik. From the website: "It is an open access...

GENI-ACT

24 Jan 2016 | Software (Off-site)

GENI-ACT allows collaborative genome annotation. Researchers or students can collectively suggest changes to an existing genome with supporting evidence. Changes can be ported back to genbank by exporting to a sequin file format. GENI-ACT also has ported the education components from IMG-ACT....

Population Genetics: When Darwin Met Mendel - Crash Course Biology

03 Oct 2015 | Teaching & Reference Material | Contributor(s): CrashCourse

This Youtube video talks about population genetics, which helps to explain the evolution of populations over time by combing the principles of Mendel and Darwin, and by means of the Hardy-Weinberg equation, all in an upbeat, modern and somewhat zany manner.

Mendelian Genetics, Probability, Pedigree, and Chi-Squared Statistics

03 Oct 2015 | Teaching & Reference Material | Contributor(s): Anne Brokaw, Michelle Garber-Talamo

This resource has been updated - find the current version here: https://qubeshub.org/publications/341In this classroom activity, students are introduced to the genetics of sickle cell disease by a short film The Making of the Fittest: Natural Selection in Humans . A classroom handout...

A Laboratory Class Exploring Microbial Diversity and Evolution Using Online Databases, the Biology Workbench, and Phylogenetics Software

29 Sep 2015 | Teaching & Reference Material | Contributor(s): Sarah Boomer, Kelly Shipley, Bryan Dutton, Daniel Lodge

Students assemble and align bacterial datasets using DNA information downloaded from the National Center for Biotechnology Information website and Biology Workbench.  Specifically, they compare unknown original DNA sequences (from, in our case, hot spring communities) to a backbone of...

E. coli Citrate Use

24 Aug 2015 | Teaching & Reference Material

This resource has been updated - find the current version here: https://qubeshub.org/publications/357Bacteria are excellent model organisms for studying evolution.  They are easy to grow, maintain, and handle under very controlled conditions.  Even more importantly for evolution...

Monkey Opsins

20 Aug 2015 | Teaching & Reference Material

This resource has been updated - find the current version here: https://qubeshub.org/publications/356Humans have trichromatic vision. Our eyes detect colors in the visible range of the spectrum using three different cone cell types, each maximally stimulated by a different wavelength of...

Joel E. Greengiant Learns About Peas: From Nucleotides to Selection

17 Jun 2015 | Teaching & Reference Material | Contributor(s): Merle Heidemann, Peter J.T. White, Jim Smith

This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/845This case study follows purveyors of peas, Joel E. and Jolene Greengiant, as they learn about the origin, biochemistry, genetics and eventual artificial selection of sweet...

AIM-UP! GIS and bats lesson

28 Mar 2015 | Teaching & Reference Material

This resource has been updated - find the current version here: https://qubeshub.org/publications/335This lesson introduces the use of GIS (geographic information systems) in the study of biological questions, using bats as the model organism. This activity requires access to GIS...

AIM-UP! Coal balls lesson

28 Mar 2015 | Teaching & Reference Material | Contributor(s): Monte Garroutte, Jordan Metzgar, Hirotsugu Mori

This resource has been updated - find the current version here: https://qubeshub.org/publications/334In this activity, students learn about ancient plant life and climate change by examining coal balls. In addition to the lesson itself, information is provided on where to purchase coal ball...

Drivers of Avian Local Species Richness: Continental-Scale Gradients, Regional Landscape, or Local Land Cover?

27 Mar 2015 | Teaching & Reference Material | Contributor(s): Tom Langen

This resource has been updated - find the current version here: https://qubeshub.org/publications/269An ecology laboratory focusing upon the concept of species richness and its study.From the module:  Students learn how to test hypotheses related to the local, regional, and continental...

MathBench Biology Modules

13 Mar 2015 | Teaching & Reference Material | Contributor(s): Katerina V. Thompson, Kären C. Nelson, Gili Marbach-Ad, Michael Keller, William F. Fagan, Patricia A. Shields

Modules designed to help students understand the math behind the material learned in introductory ecology courses. 

Measuring the Health of the Earth Using the Theory of Island Biography

11 Mar 2015 | Teaching & Reference Material | Contributor(s): Jana Eggleston, Stephanie Renee Campau, Farshid Ahrestani, Holly D Gaff

This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/868Biodiversity has been shown to be a good measure of the health of the planet system (McGrady-Steed et al. 1997). The more species and genetic diversity, the more stable the...

Data Nuggets - Bringing Real Data into the Classroom to Unearth Students' Quantitative & Inquiry Skills

22 Jan 2015 | Teaching & Reference Material | Contributor(s): MK Kjelvik, EH Schultheis

Data Nuggets are narratives about real research, featuring the principal scientist, that include data students can analyze.   Right now they are aimed at K-12 students, but many topics covered are taught in college courses, and there is no limit to what mathematical or statistical concepts...

Chi-Square analysis of two point test cross data

21 Jan 2015 | Teaching & Reference Material | Contributor(s): Bob Sheehy

This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/746This flash tutorial simulates analysis of a 2 point test cross and will walk you through the analysis of two hypothetical traits. Your goal is to determine if these traits...

IPMpack: an R package for Integral Projection Models

19 Jan 2015 | Software (Off-site) | Contributor(s): C. Jessica E. Metcalf, Sean M. McMahon, Roberto Salguero-Gómez, Eelke Jongejans, Cory Merow

This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/779IPMpack is an R package (R Development Core Team 2013) that allows users to build and analyse Integral Projection Models. An IPM is a demographic tool to explore the...

Ch 11 Genetics and Statistics (Chi Square)

19 Jan 2015 | Teaching & Reference Material | Contributor(s): Shannan Muskopf

A PowerPoint slideshow which informs the viewer of  the purposes of chi square.  The PowerPoint includes  definitions of relevant terms,  step-by-step procedures for calculating chi square, and questions for individual thoughts.  The slides support one example...

AIMS- Analyzing Images to learn Mathematics and Statistics - studying leaf cutter ants to learn linear regression

15 Jan 2015 | Teaching & Reference Material | Contributor(s): Jeremy M Wojdak

This resource has been updated - find the current version here: https://qubeshub.org/publications/239This is a teaching resource that uses fascinating images and videos of leaf cutter ants foraging in Panama to provide an engaging context for students to learn about mathematics and...

Human Genetic Variation: A Flipped Exercise in Cultural Competency

15 Jan 2015 | Teaching & Reference Material | Contributor(s): Shoumita Dasgupta, Katherine Larabee Tuttle

"This interactive case discussion was created to emphasize the clinical relevance of population genetics, but is also a suitable resource for teaching the basic principles of population genetics while relating them to human genetic variation. Our understanding of human genetic variation has...