Modeling the Mechanisms of Evolution

25 May 2018 | Software (On-site) | Contributor(s): Jackie Matthes

Simulate population-level mechanisms of evolution: genetic drift, gene flow, and natural selection.

Introduction to Probability, Statistics, and Random Processes

07 Nov 2016 | Teaching & Reference Material | Contributor(s): Hossein Pishro-Nik

This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/896Check out the textbook called Introduction to Probability, Statistics, and Random Processes by Hossein Pishro-Nik. From the website: "It is an open access...

Training In-Service Teachers to Think Deeply About Modeling in the Common Core Movement

11 Oct 2016 | Teaching & Reference Material | Contributor(s): Talitha Washington

This resource has been updated - find the current version here: https://qubeshub.org/publications/242Over the years, I have conducted in-service teacher training sessions and workshops organized by the Capstone Institute at Howard University. My role has been to enhance teacher content...

A Framework for Modeling to Encourage Interdisciplinary Conversations

11 Oct 2016 | Teaching & Reference Material | Contributor(s): Carrie Diaz Eaton

This resource has been updated - find the current version here: https://qubeshub.org/publications/209Here we present a framework for thinking about what models and modeling are, particularly to other disciplines. We encourage that differing disciplinary approaches are seen as part of a...

A Framework for Teaching Modeling to Biologists

10 Oct 2016 | Teaching & Reference Material | Contributor(s): Drew LaMar

This resource has been updated - find the current version here: https://qubeshub.org/publications/210What are the modeling skills and metacognitive strategies of importance for the life sciences? In this talk, we describe a teaching and learning framework around modeling...

Modeling: A Primer - The crafty art of making, exploring, extending, transforming, tweaking, bending, disassembling, questioning, and breaking models

26 Feb 2016 | Teaching & Reference Material | Contributor(s): William Wimsatt, Jeff Schank

This resource has been updated - find the current version here: https://qubeshub.org/publications/346Explore how to use, analyze, and criticize some important and historically influential models in biology in this text only module.

GENI-ACT

24 Jan 2016 | Software (Off-site)

GENI-ACT allows collaborative genome annotation. Researchers or students can collectively suggest changes to an existing genome with supporting evidence. Changes can be ported back to genbank by exporting to a sequin file format. GENI-ACT also has ported the education components from IMG-ACT....

Sting, Carry and Stock: How Corpse Availability Can Regulate De-Centralized Task Allocation in a Ponerine Ant Colony

20 Oct 2015 | Teaching & Reference Material | Contributor(s): Istvan Karsai, Thomas Schmickl

This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/844We develop a model to produce plausible patterns of task partitioning in the ponerine ant Ectatomma ruidum based on the availability of living prey and prey corpses. The...

SIMIODE - Systemic Initiative for Modeling Investigations and Opportunities with Differential Equations

20 Oct 2015 | Teaching & Reference Material | Contributor(s): Brian Winkel

SIMIODE - Systemic Initiative for Modeling Investigations and Opportunities with Differential Equations  is about teaching differential equations using modeling and technology upfront and throughout the learning process. You can learn more at our dynamic website, www.simiode.org, where we...

A Laboratory Class Exploring Microbial Diversity and Evolution Using Online Databases, the Biology Workbench, and Phylogenetics Software

29 Sep 2015 | Teaching & Reference Material | Contributor(s): Sarah Boomer, Kelly Shipley, Bryan Dutton, Daniel Lodge

Students assemble and align bacterial datasets using DNA information downloaded from the National Center for Biotechnology Information website and Biology Workbench.  Specifically, they compare unknown original DNA sequences (from, in our case, hot spring communities) to a backbone of...

QUBES: a community focused on supporting teaching and learning in quantitative biology

30 Jul 2015 | Teaching & Reference Material | Contributor(s): Sam S Donovan, Carrie Diaz Eaton, Tom Gower, Kristin Jenkins, Drew LaMar, DorothyBelle Poli, Bob Sheehy, Jeremy M Wojdak

This resource has been updated - find the current version here: https://qubeshub.org/publications/226This letter provides an overview of the Quantitative Undergraduate Biology Education and Synthesis (QUBES) Project funded through the National Science Foundation. The project has five...

Dairy Farm Mathematics

09 Jul 2015 | Teaching & Reference Material | Contributor(s): Richard Francisco, Katie Gilbert

This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/783From the website:We based our instructional unit on the premise that many people have, that one does not need mathematics if the they do not plan on attending...

Disease Spread Simulation with M&M's and Information on the wider SIMIODE community

03 Jul 2015 | Teaching & Reference Material | Contributor(s): Brian Winkel

This resource has been updated - find the current version here: https://qubeshub.org/publications/358This is a Student Version of a Modeling Scenario from the community, SIMIODE - Systemic Initiative for Modeling Investigations and Opportunities with Differential Equations at...

BactVsPhage

27 Jun 2015 | Software (On-site) | Contributor(s): Drew LaMar

Simulates basic models in theoretical ecology, as well as three models of bacteria/bacteriophage interactions.

ModelSim Population Biology Unit

18 May 2015 | Teaching & Reference Material

This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/902This resource provides rich student modeling activities and materials, teacher resources, and much more, in the realm of agent based models applied to population biology....

Ecology and Epidemiology in R

09 May 2015 | Teaching & Reference Material

This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/837

Numbers Count!: Calculus 2 course

28 Mar 2015 | Teaching & Reference Material | Contributor(s): Claudia Neuhauser

This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/751Based upon the University of Minnesota Bachelor's of Science in Health Science calculus curriculum (part 2), this course  introduces linear transformations,...

Quantitative Reasoning: Peer Review 16(3), 2014

27 Mar 2015 | Teaching & Reference Material | Contributor(s): Shelly Johnson Carey

This resource has been updated - find the current version here:https://qubeshub.org/qubesresources/publications/862In this issue of the journal Peer Review, the authors discuss the issues surrounding quantitative literacy. From the journal:...

Revolutionizing the Use of Natural History Collections in Education

11 Mar 2015 | Teaching & Reference Material | Contributor(s): Karen E. Powers, L. Alan Prather, Joesph A. Cook, James Woolley, Henry L. Bart Jr., Anna K. Monfils, Petra Sierwald

Using natural history collections, both physical specimens and archive data, promises to connect classroom learning with the real world of science.    From the article:  "Natural history collections are an irreplaceable and extensive record of life, and form the basis of our...

Natural History Collections as Emerging Resources for Innovative Education

24 Feb 2015 | Teaching & Reference Material

This resource has been updated - find the current version here:https://qubeshub.org/qubesresources/publications/854Article abstract:"There is an emerging consensus that undergraduate biology education in the United States is at a crucial juncture, especially...