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Resources: Software (On-site)

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  1. Investigating Trade-offs among Mammal Traits

    07 Jun 2018 | Software (On-site) | Contributor(s): Jackie Matthes

    This app draws on a large species-level dataset with metabolic, life history, and ecological traits of most living and recently extinct mammal species. Users can select and plot traits, fit linear models to the data, and query displayed datapoints.

  2. Modeling the Mechanisms of Evolution

    25 May 2018 | Software (On-site) | Contributor(s): Jackie Matthes

    Simulate population-level mechanisms of evolution: genetic drift, gene flow, and natural selection.

  3. Google Charts Example - Bubble

    18 May 2018 | Software (On-site)

    This is the "bubble" example from Joe Cheng's Google Charts package.

  4. R Shiny App Example

    09 May 2018 | Software (On-site) | Contributor(s): Drew LaMar

    This is a simple example used to demonstrate what is needed to host your R Shiny app on QUBESHub.

  5. Radiant

    16 Sep 2015 | Software (On-site)

    Business analytics using R and Shiny.

  6. Serenity

    25 Jun 2017 | Software (On-site) | Contributor(s): Drew LaMar

    A platform-independent browser-based interface to data science tools for the classroom.

  7. Jupyter Notebook

    05 May 2017 | Software (On-site) | Contributor(s): Martin Hunt

    Starts the Jupyter notebook server in your "notebooks" directory in your home directory.

  8. Workspace Dev

    14 Jun 2016 | Software (On-site) | Contributor(s): Erich Huebner

    Upcoming OS development workspace

  9. Wood Density

    15 Oct 2015 | Software (On-site)

    Wood density shiny app

  10. OpenRefine

    18 Jan 2016 | Software (On-site)

    OpenRefine (formerly Google Refine) is a powerful tool for working with messy data: cleaning it; transforming it from one format into another; and extending it with web services and external data.

  11. DFIELD

    19 Oct 2015 | Software (On-site)

    DFIELD is an interactive tool that graphs a direction field for a given differential equation.

  12. R Commander

    04 Sep 2015 | Software (On-site) | Contributor(s): Drew LaMar

    R provides a powerful and comprehensive system for analysing data and when used in conjunction with the R-commander (a graphical user interface, commonly known as Rcmdr) it also provides one that is easy and intuitive to use.

  13. BactVsPhage

    27 Jun 2015 | Software (On-site) | Contributor(s): Drew LaMar

    Simulates basic models in theoretical ecology, as well as three models of bacteria/bacteriophage interactions.

  14. FastQC

    24 Jun 2015 | Software (On-site)

    A quality control tool for high throughput sequence data.

  15. Mesquite

    18 Jun 2015 | Software (On-site)

    A modular system for evolutionary analysis

  16. ImageJ

    16 Jun 2015 | Software (On-site)

    Image processing and analysis in Java.

  17. Ka-me: Voronoi Image Analyzer 1.0

    15 Jun 2015 | Software (On-site) | Contributor(s): John R Jungck

    Ka-me is a Voronoi image analyzer that allows users to analyze any image with a convex polygonal tessellation or any spatial point distribution by fitting Voronoi polygons and their dual, Delaunay triangulations, to the pattern.

  18. BioRadiant

    19 May 2015 | Software (On-site) | Contributor(s): Drew LaMar

    Interactive statistics package using R and Shiny.

  19. Statistical Power for One-Sample t-Test

    18 May 2015 | Software (On-site) | Contributor(s): Drew LaMar

    Interactive visualization of statistical power for a one-sample t-test.

  20. PPLANE

    02 Apr 2015 | Software (On-site)

    PPLANE is a tool for Phase Plane Analysis of a System of Differential Equations of the form: x' = dx/dt = f(x,y), y' = dy/dt = g(x,y).