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Tags: Bioinformatics Education

All Categories (1-20 of 43)

  1. Mini-Workshop August 14, 2020

    28 Aug 2020 | Teaching Materials | Contributor(s):

    By Vinayak Mathur1, Anne Rosenwald2, Gaurav Arora3

    1. Cabrini University 2. Georgetown University 3. Gallaudet University

    We reviewed the materials available on Genome Solver (other lessons here) and described our new python pipeline for examining horizontal gene transfer and a new synteny lesson in detail.

    https://qubeshub.org/publications/2084/?v=1

  2. Pre-lesson: Introduction to BLAST

    05 Aug 2020 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. This pre-lesson introduces the BLAST tool.

    https://qubeshub.org/publications/1085/?v=2

  3. Lesson VII - Synteny

    05 Aug 2020 | Teaching Materials | Contributor(s):

    By Gaurav Arora1, Anne Rosenwald2, Vinayak Mathur3

    1. Gallaudet University 2. Georgetown University 3. Cabrini University

    The lesson teaches about synteny or the order of genes along a chromosome, which is useful for looking at orthologous genes between two species or strains.

    https://qubeshub.org/publications/1414/?v=3

  4. Lesson III - Annotation

    05 Aug 2020 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...

    https://qubeshub.org/publications/856/?v=3

  5. Madhav Nepal

    https://qubeshub.org/community/members/17135

  6. Exploring the evolution of caffeine biosynthesis enzymes

    22 Jan 2020 | Teaching Materials | Contributor(s):

    By Shuchismita Dutta

    RCSB Protein Data Bank, Rutgers University

    Caffeine is a very common stimulant consume worldwide as tea, coffee, mate, cocoa, and chocolate. Ever wondered why plants make caffeine? Do all caffeine producing plants have the same enzymes for...

    https://qubeshub.org/publications/1723/?v=1

  7. BLAST Exercises for Analyzing Cloning Results

    09 Jan 2020 | Teaching Materials | Contributor(s):

    By Erin R. Morris

    Baker University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. These activities have modified Lesson 1: Introduction to Genome...

    https://qubeshub.org/publications/1734/?v=1

  8. Databases: A Study of Influenza

    09 Jan 2020 | Teaching Materials | Contributor(s):

    By Selene Nikaido

    University of Central Missouri

    This lesson introduces the student to the Influenza Research Database. Students will select Influenza genome sequences to see how they are related. Students tests hypotheses about evolutionary...

    https://qubeshub.org/publications/1642/?v=1

  9. Introduction to Genome Annotation

    09 Jan 2020 | Teaching Materials | Contributor(s):

    By Selene Nikaido

    University of Central Missouri

    This exercise is an adaptation of the Annotation Lesson by Rosenwald et al. It introduces the use of bioinformatics tools to extract information from genome databases. It is a basic lesson on...

    https://qubeshub.org/publications/1560/?v=1

  10. Lesson VI - The Community Science Project

    19 Nov 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver's Community Science Project was developed as a way to use the skills taught in the previous lessons. We're asking members of the community to provide instances of potential phage...

    https://qubeshub.org/publications/859/?v=2

  11. Genome Solver: Complete Set of Lessons

    23 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating with...

    https://qubeshub.org/publications/860/?v=2

  12. Lesson V - Phylogenetics

    22 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson V is an introduction to Phylogenetics.

    https://qubeshub.org/publications/858/?v=2

  13. Lesson VII - Synteny

    22 Oct 2019 | Teaching Materials | Contributor(s):

    By Gaurav Arora1, Anne Rosenwald2, Vinayak Mathur3

    1. Gallaudet University 2. Georgetown University 3. Cabrini University

    The lesson teaches about synteny or the order of genes along a chromosome, which is useful for looking at orthologous genes between two species or strains.

    https://qubeshub.org/publications/1414/?v=2

  14. Lesson IV - Comparative Genomics

    10 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson IV, Comparative Genomics, discusses some of the tools...

    https://qubeshub.org/publications/857/?v=2

  15. Lesson III - Annotation

    10 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...

    https://qubeshub.org/publications/856/?v=2

  16. Oct 10 2019

    Integration of Bioinformatics into Life Science Education: Roadmap for the Future

    NIBLSE is an NSF-funded Research Coordination Network that facilitates the integration of bioinformatics into life science curricula. The long-tern goal of NIBLSE is to achieve the full...

    https://qubeshub.org/news/events/details/1719

  17. Kristen Amick

    https://qubeshub.org/community/members/12445

  18. NMDS to Study Dead Wood Fungi Communities in Parks of New Jersey

    30 Jul 2019 | Teaching Materials | Contributor(s):

    By Maria Shumskaya1, Christopher Zambell1

    Kean University

    Students use dead wood (saproxylic) fungi occurrence data from New Jersey, USA collected by students and faculty of Kean University to learn the basics of community ecology. Simple NMDS ordination...

    https://qubeshub.org/publications/1367/?v=1

  19. Bioinformatics core competencies for undergraduate life sciences education

    Collections | 09 Jun 2019 | Posted by Carlos Christopher Goller

    https://qubeshub.org/community/groups/hits/collections/frameworks-and-competencies-for-bioinformatics-education

  20. Judy Brusslan

    https://qubeshub.org/community/members/11982