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Frederic Chain
https://qubeshub.org/community/members/34285
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Robert A Zinna
https://qubeshub.org/community/members/34155
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Lesson III - Annotation
30 Sep 2022 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...
https://qubeshub.org/publications/856/?v=4
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Lesson II - Databases
30 Sep 2022 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson II introduces the principal databases for microbial...
https://qubeshub.org/publications/855/?v=3
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Lesson VI - The Community Science Project
30 Sep 2022 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
Genome Solver's Community Science Project was developed as a way to use the skills taught in the previous lessons. We're asking members of the community to provide instances of potential phage...
https://qubeshub.org/publications/859/?v=3
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Lesson II - Databases
30 Sep 2022 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson II introduces the principal databases for microbial...
https://qubeshub.org/publications/855/?v=2
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Bruce Nash
https://qubeshub.org/community/members/31417
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Amara Brighe Sugalski
https://qubeshub.org/community/members/30746
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Manohar Chakrabarti
https://qubeshub.org/community/members/24624
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Pre-lesson: Introduction to BLAST
22 Sep 2021 | Teaching Materials | Contributor(s):
By Sarah Prescott
BioQUEST - Executive Director / UNH - Assoc. Prof.
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. This pre-lesson introduces the BLAST tool.
https://qubeshub.org/publications/2755/?v=1
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Pre-lesson: Introduction to BLAST
22 Sep 2021 | Teaching Materials | Contributor(s):
By Sarah Prescott
BioQUEST - Executive Director / UNH - Assoc. Prof.
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. This pre-lesson introduces the BLAST tool.
https://qubeshub.org/publications/2754/?v=1
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MiniWorkshop Follow-Up October 2, 2020
03 Oct 2020 | Teaching Materials | Contributor(s):
By Gaurav Arora1, Vinayak Mathur2
1. Gallaudet University 2. Cabrini University
A follow up to our mini workshop of August 14, 2020. Further information about the python pipeline for HGT and the new cytoscape lesson.
https://qubeshub.org/publications/2113/?v=1
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Mini-Workshop August 14, 2020
28 Aug 2020 | Teaching Materials | Contributor(s):
By Vinayak Mathur1, Anne Rosenwald2, Gaurav Arora3
1. Cabrini University 2. Georgetown University 3. Gallaudet University
We reviewed the materials available on Genome Solver (other lessons here) and described our new python pipeline for examining horizontal gene transfer and a new synteny lesson in detail.
https://qubeshub.org/publications/2084/?v=1
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Pre-lesson: Introduction to BLAST
05 Aug 2020 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. This pre-lesson introduces the BLAST tool.
https://qubeshub.org/publications/1085/?v=2
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Lesson VII - Synteny
05 Aug 2020 | Teaching Materials | Contributor(s):
By Gaurav Arora1, Anne Rosenwald2, Vinayak Mathur3
1. Gallaudet University 2. Georgetown University 3. Cabrini University
The lesson teaches about synteny or the order of genes along a chromosome, which is useful for looking at orthologous genes between two species or strains.
https://qubeshub.org/publications/1414/?v=3
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Lesson III - Annotation
05 Aug 2020 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...
https://qubeshub.org/publications/856/?v=3
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Madhav Nepal
https://qubeshub.org/community/members/17135
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Exploring the evolution of caffeine biosynthesis enzymes
22 Jan 2020 | Teaching Materials | Contributor(s):
By Shuchismita Dutta
RCSB Protein Data Bank, Rutgers University
Caffeine is a very common stimulant consume worldwide as tea, coffee, mate, cocoa, and chocolate. Ever wondered why plants make caffeine? Do all caffeine producing plants have the same enzymes for...
https://qubeshub.org/publications/1723/?v=1
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BLAST Exercises for Analyzing Cloning Results
09 Jan 2020 | Teaching Materials | Contributor(s):
By Erin R. Morris
Baker University
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. These activities have modified Lesson 1: Introduction to Genome...
https://qubeshub.org/publications/1734/?v=1
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Databases: A Study of Influenza
09 Jan 2020 | Teaching Materials | Contributor(s):
By Selene Nikaido
University of Central Missouri
This lesson introduces the student to the Influenza Research Database. Students will select Influenza genome sequences to see how they are related. Students tests hypotheses about evolutionary...
https://qubeshub.org/publications/1642/?v=1