Lesson VI - The Community Science Project
31 Oct 2018 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
Genome Solver's Community Science Project was developed as a way to use the skills taught in the previous lessons. We're asking members of the community to provide instances of potential phage...
Lesson VII - Synteny
05 Aug 2020 | Teaching Materials | Contributor(s):
By Gaurav Arora1, Anne Rosenwald2, Vinayak Mathur3
1. Gallaudet University 2. Georgetown University 3. Cabrini University
The lesson teaches about synteny or the order of genes along a chromosome, which is useful for looking at orthologous genes between two species or strains.
22 Oct 2019 | Teaching Materials | Contributor(s):
Mini-Workshop August 14, 2020
28 Aug 2020 | Teaching Materials | Contributor(s):
By Vinayak Mathur1, Anne Rosenwald2, Gaurav Arora3
1. Cabrini University 2. Georgetown University 3. Gallaudet University
We reviewed the materials available on Genome Solver (other lessons here) and described our new python pipeline for examining horizontal gene transfer and a new synteny lesson in detail.
MiniWorkshop Follow-Up October 2, 2020
03 Oct 2020 | Teaching Materials | Contributor(s):
By Gaurav Arora1, Vinayak Mathur2
1. Gallaudet University 2. Cabrini University
A follow up to our mini workshop of August 14, 2020. Further information about the python pipeline for HGT and the new cytoscape lesson.
NIBLSE Incubators: A community-based model for the development of bioinformatics learning resources
21 May 2019 | Teaching Materials | Contributor(s):
By Michael Sierk1, Sam S Donovan2, Bill Morgan3, Hayley Orndorf2, Mark A. Pauley4, Sabrina Robertson5, Elizabeth F Ryder6, William Tapprich7
1. Saint Vincent College 2. University of Pittsburgh 3. The College of Wooster 4. University of Nebraska at Omaha 5. UNC-Chapel Hill 6. Worcester Polytechnic Institute 7. University of Nebraska-Omaha
Presentation on NIBLSE incubators at the 2019 Great Lakes Bioinformatics Conference
15 May 2019 | Teaching Materials | Contributor(s):
NMDS to Study Dead Wood Fungi Communities in Parks of New Jersey
30 Jul 2019 | Teaching Materials | Contributor(s):
By Maria Shumskaya1, Christopher Zambell1
Students use dead wood (saproxylic) fungi occurrence data from New Jersey, USA collected by students and faculty of Kean University to learn the basics of community ecology. Simple NMDS ordination...
Pre-lesson: Introduction to BLAST
22 Sep 2021 | Teaching Materials | Contributor(s):
By Sarah Prescott
BioQUEST - Executive Director / UNH - Assoc. Prof.
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. This pre-lesson introduces the BLAST tool.
21 Feb 2019 | Teaching Materials | Contributor(s):