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Tags: phylogenetics

All Categories (1-20 of 54)

  1. Cutthroat trout in Colorado: A case study connecting evolution and conservation

    30 Aug 2021 | Teaching Materials | Contributor(s):

    By Sierra M Love Stowell1, Andrew P. Martin1

    University of Colorado Boulder

    Evaluation of evidence is a key process skill for the core competencies of applying the process of science and using quantitative reasoning. This case study enables upper-division biology students...

    https://qubeshub.org/publications/2568/?v=1

  2. Forensic Phylogenetics: Implementing Tree-thinking in a Court of Law

    28 Aug 2021 | Teaching Materials | Contributor(s):

    By Cissy J Ballen*1, Abby Grace Drake2, Kelly R. Zamudio2

    1. Auburn University 2. Cornell University

    Here we describe an in-class activity developed for Evolutionary Biology and Biodiversity (BioEE1780) at Cornell University, an introductory course required of all biology majors. This activity...

    https://qubeshub.org/publications/2632/?v=1

  3. CURE-all: Large Scale Implementation of Authentic DNA Barcoding Research into First-Year Biology Curriculum

    28 Aug 2021 | Teaching Materials | Contributor(s):

    By Oliver Hyman*1, Elizabeth Doyle1, Joseph Harsh1, Joanna Mott2, Andrea Pesce1, Bejan Rasoul1, Kyle Seifert1, Ray Enke1

    1. James Madison University 2. California State University

    Growing calls in science education reform have emphasized wide-scale engagement of first-year undergraduate students in authentic research experiences; however, large course enrollments, inadequate...

    https://qubeshub.org/publications/2625/?v=1

  4. Building Trees: Introducing evolutionary concepts by exploring Crassulaceae phylogeny and biogeography

    27 Aug 2021 | Teaching Materials | Contributor(s):

    By Nisa Karimi1, Brian M. Parks1, Doug Rouse1, Kerry Martin1, Xing Dong1, Pulikesi Chittu Rajangam1, David A. Baum1, Jean G. Heitz1

    University of Wisconsin, Madison

    Teaching evolutionary theory is foundational for all biological sciences and a key aspect of overall science literacy. The conceptual framework for understanding evolution relies on thinking...

    https://qubeshub.org/publications/2595/?v=1

  5. Venom: To Kill or Cure?

    11 Aug 2021 | Teaching Materials | Contributor(s):

    By Valerie Ledford

    Columbia High School

    In this case study, students will explore concepts of evolution, protein structure and function, taxonomy, and methods of scientific inquiry in a real-world way.

    https://qubeshub.org/publications/2506/?v=1

  6. Inquiry-based hypothesis testing using phylogenetic trees in MEGA

    17 Jun 2021 | Teaching Materials | Contributor(s):

    By Kristin Hultgren

    Seattle University

    A key learning objective in biology is applying bioinformatics tools to test a real-life question. These inquiry-based modules have students assemble and align data, and construct simple...

    https://qubeshub.org/publications/2379/?v=1

  7. BETTSI - Basic Evolutionary Tree-Thinking Skills Instrument

    08 Jun 2021 | Teaching Materials | Contributor(s):

    By Kristin Jenkins1, Louise Mead2, David Baum, Kristy L Daniel3, Carrie Jo Bucklin, Austin Leone, J. Phil Gibson4, Erin Naegle5

    1. BioQUEST 2. BEACON Center for the Study of Evolution in Action 3. Texas State University 4. University of Oklahoma 5. Columbia College, Sonora CA

    A short, multiple choice diagnostic designed to provide instructors with a quick check on students’ understanding of and ability to read and interpret phylogenies.

    https://qubeshub.org/publications/2106/?v=1

  8. Peter Uetz

    https://qubeshub.org/community/members/22050

  9. Sequence Similarity: Introducing Biological Databases to Community College Biology Students

    01 Jun 2021 | Teaching Materials | Contributor(s):

    By Jennifer Katcher

    This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/publications/2407/?v=1

  10. Developing a phylogram from computational resources.

    01 Jun 2021 | Teaching Materials | Contributor(s):

    By Melanie Lenahan1, Shea Cinquemani1

    Raritan Valley Community College

    This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/publications/2404/?v=1

  11. When did I lose my legs? A limbless lizard tale

    11 Sep 2020 | Teaching Materials | Contributor(s):

    By Patrick Kelly

    Leesburg High School

    Using oVERT project models students examine examples of extant traditional lizards, snakes and limbless lizards and create phylogenies based on trait and genetic data.

    https://qubeshub.org/publications/2102/?v=1

  12. Jocelyn Colella

    https://qubeshub.org/community/members/17414

  13. Introduction to nucleotide sequence analysis and protein modeling in MEGA and PyMol using coronavirus SARS-CoV-2

    18 Jul 2020 | Teaching Materials | Contributor(s):

    By Maria Shumskaya1, Nicholas Lorusso2

    1. Kean University 2. University of North Texas at Dallas

    Introduction into computational approaches in phylogeny and protein modeling based on coronavirus SARS-CoV-2 (caused COVID-19 pandemic). Two self-guided tutorials for standard lab classes of 2.5...

    https://qubeshub.org/publications/1796/?v=2

  14. Vertebrate Clade Race

    11 Jun 2020 | Teaching Materials | Contributor(s):

    By David Baum1, Kristin Jenkins2

    1. University of Wisconsin 2. BioQUEST

    This activity introduces basic tree reading skills for evolutionary phylogenies. It is designed as a short group activity. After completing this activity, students should be familiar with basic...

    https://qubeshub.org/publications/1906/?v=1

  15. Eloise Carter

    https://qubeshub.org/community/members/16667

  16. Louse and Human Coevolution

    22 Apr 2020 | Teaching Materials | Contributor(s):

    By Anna Monfils1, Julie Allen2, Brad Goodner3, Debra Linton1

    1. Central Michigan University 2. University of Nevada Reno 3. Hiram College

    This module examines the complicated co-evolution of Lice, Humans, and Great Apes

    https://qubeshub.org/publications/1801/?v=1

  17. Introduction to nucleotide sequence analysis and protein modeling in MEGA and PyMol using coronavirus SARS-CoV-2

    03 Apr 2020 | Teaching Materials | Contributor(s):

    By Maria Shumskaya1, Nicholas Lorusso2

    1. Kean University 2. University of North Texas at Dallas

    Introduction into computational approaches in phylogeny and protein modeling based on coronavirus SARS-CoV-2 (caused COVID-19 pandemic). Two self-guided tutorials for standard lab classes of 2.5...

    https://qubeshub.org/publications/1796/?v=1

  18. bridgette clarkston

    https://qubeshub.org/community/members/12616

  19. Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach

    29 May 2019 | Teaching Materials | Contributor(s):

    By Ami Erickson

    This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein...

    https://qubeshub.org/publications/1247/?v=1

  20. Sequence Similarity Resource Adaptation: Exploring Ebola Virus

    16 May 2019 | Teaching Materials | Contributor(s):

    By William Tapprich

    University of Nebraska-Omaha

    This adaptation of the sequence similarity resource provides biology students with a basic set of bioinformatics concepts and tools. These concepts and tools are used to explore relationships...

    https://qubeshub.org/publications/1219/?v=1