Software (Off-site) (1-12 of 12)

1. Predator-prey models as XPP files

   out of 5 stars 

   12 Nov 2018 | | Contributor(s):: Eli E Goldwyn

   These are the .ode files that XPP takes as input.  lv.ode is the Lotka-Volterra predator-prey model rm.ode is the Rosenzweig-MacArthur model rm3.ode is the Rosnezweig-MacArthur model but with predation following a Holling Type III functional response. The file rm.ode is...

2. Avida-ED

   out of 5 stars 

   06 Oct 2017 | | Contributor(s):: Robert T Pennock, Diane Blackwood

        This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/874Avida-ED is an award-winning educational application developed at Michigan State University...

3. Web Popgen

   out of 5 stars 

   11 Jun 2017 | | Contributor(s):: Bob Sheehy

   This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/842A Hardy-Weinberg based population genetics simulator. This program assumes a single gene and two alleles. Simulation of allele frequency changes similar to...

4. Genetic Drift Simulation - NetLogo

   out of 5 stars 

   23 Jun 2016 | | Contributor(s):: Tony Weisstein

   This model simulates genetic drift in a population.  The user can control the population size, whether the population is subdivided into separate local populations, and the amount of gene flow (if any) between local populations.  Phenotype frequency in each subpopulation is plotted as a...

5. GENI-ACT

   out of 5 stars 

   24 Jan 2016 |

   GENI-ACT allows collaborative genome annotation. Researchers or students can collectively suggest changes to an existing genome with supporting evidence. Changes can be ported back to genbank by exporting to a sequin file format. GENI-ACT also has ported the education components from IMG-ACT....

6. Populus: Simulations of Population Biology

   out of 5 stars 

   05 Oct 2015 | | Contributor(s):: D. N. Alstad

   This resource has been updated - find the current version here: https://qubeshub.org/publications/352The Populus software contains a set of simulations that we use to teach population biology and evolutionary ecology at the University of Minnesota. Simulation models may be chosen from a...

7. Augmented Reality Metabolic Pathways (ARMET)

   out of 5 stars 

   25 Aug 2015 | | Contributor(s):: Eduardo Galembeck

   This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/786The New Media Consortium (NMC) Horizon Project defines educational technology in a broad sense as tools and resources that are used to improve teaching, learning, and...

8. Java Applets for Power and Sample Size

   out of 5 stars 

   10 Mar 2015 | | Contributor(s):: Russell Lenth

   This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/899From the website:This software is intended to be useful in planning statistical studies.  It is not intended to be used for analysis of data that have already been...

9. IPMpack: an R package for Integral Projection Models

   out of 5 stars 

   19 Jan 2015 | | Contributor(s):: C. Jessica E. Metcalf, Sean M. McMahon, Roberto Salguero-Gómez, Eelke Jongejans, Cory Merow

   This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/779IPMpack is an R package (R Development Core Team 2013) that allows users to build and analyse Integral Projection Models. An IPM is a demographic tool to explore the...

10. ABO Blood Group Frequencies

    out of 5 stars 

    14 Jan 2015 | | Contributor(s):: John R. Jungck, Jennifer A. Spangenberg

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/756An Excel workbook in which students can calculate blood type frequencies through different approaches (Hardy-Weinberg, quadratic formula, and the EM algorithm).  The...

11. Birthday Problem and Class Phenotypic Probabilities

    out of 5 stars 

    13 Jan 2015 | | Contributor(s):: John R. Jungck, Annelise L. Myers, Jennifer A. Spangenberg

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/774An Excel sheet that allows students to input class data about various phenotypic features and then calculates the probability of other people having the same...

12. Classical Genetics Simulator

    out of 5 stars 

    12 Jan 2015 | | Contributor(s):: Ben Adamczyk

    Students manage virtual fly populations to determine the mode of inheritance for various traits in different populations. Students seek solutions using probabilities and testing the validity of their assumptions using chi-squared analysis.