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1. Lesson V - Phylogenetics

   22 Oct 2019 | Teaching Materials | Contributor(s):

   By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

   1. Georgetown University 2. Gallaudet University 3. Cabrini University

   Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson V is an introduction to Phylogenetics.

   https://qubeshub.org/qubesresources/publications/858/?v=2

2. Lesson VII - Synteny

   22 Oct 2019 | Teaching Materials | Contributor(s):

   By Gaurav Arora¹, Anne Rosenwald², Vinayak Mathur³

   1. Gallaudet University 2. Georgetown University 3. Cabrini University

   The lesson teaches about synteny or the order of genes along a chromosome, which is useful for looking at orthologous genes between two species or strains.

   https://qubeshub.org/qubesresources/publications/1414/?v=2

3. Earth Analytics in Python Course

   15 Oct 2019 | Teaching Materials | Contributor(s):

   By Leah Wasser, Jenny Palomino, Chris Holdgraf¹

   University of California - Berkeley

   Earth analytics is an intermediate, multidisciplinary course that addresses major questions in Earth science and teaches students to use the analytical tools necessary to undertake exploration of...

   https://qubeshub.org/qubesresources/publications/1437/?v=1

4. Get Started With GIS in Open Source Python Workshop

   15 Oct 2019 | Teaching Materials | Contributor(s):

   By Leah Wasser¹, Jenny Palomino¹, Joe McGlinchy¹

   Earth Lab - University of Colorado, Boulder

   There are a suite of powerful open source python libraries that can be used to work with spatial data. Learn how to use geopandas, rasterio and matplotlib to plot and manipulate spatial data in...

   https://qubeshub.org/qubesresources/publications/1441/?v=1

5. Introduction to Version Control and Git Workshop

   15 Oct 2019 | Teaching Materials | Contributor(s):

   By Leah Wasser, Max Joseph

   Learn how to use version control with Git to work collaboratively and back up your work.

   https://qubeshub.org/qubesresources/publications/1443/?v=1

6. Writing Clean Code in R Workshop

   15 Oct 2019 | Teaching Materials | Contributor(s):

   By Max Joseph¹, Leah Wasser

   Earth Lab - University of Colorado, Boulder

   When working with data, you often spend the most amount of time cleaning your data. Learn how to write more efficient code using the tidyverse in R.

   https://qubeshub.org/qubesresources/publications/1442/?v=1

7. Introduction to Earth Data Science Textbook

   15 Oct 2019 | Teaching Materials | Contributor(s):

   By Jenny Palomino, Leah Wasser

   Introduction to Earth Data Science is an online textbook for anyone new to open reproducible science and the Python programming language. There are no prerequisites for this material, and no prior...

   https://qubeshub.org/qubesresources/publications/1440/?v=1

8. Earth Analytics in R Course

   15 Oct 2019 | Teaching Materials | Contributor(s):

   By Leah Wasser

   Earth Lab - University of Colorado, Boulder

   Earth analytics is an advanced, multidisciplinary course that addresses major questions in Earth science and teaches students to use the analytical tools necessary to undertake exploration of...

   https://qubeshub.org/qubesresources/publications/1439/?v=1

9. Earth Analytics Bootcamp Course

   15 Oct 2019 | Teaching Materials | Contributor(s):

   By Jenny Palomino¹, Leah Wasser

   Earth Lab - University of Colorado, Boulder

   The Earth Analytics Bootcamp is a three-week introductory-level course taught by instructors in Earth Lab and is a part of the Professional Certificate in Earth Data Analytics - Foundations at CU...

   https://qubeshub.org/qubesresources/publications/1438/?v=1

10. Lesson IV - Comparative Genomics

    10 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson IV, Comparative Genomics, discusses some of the tools...

    https://qubeshub.org/qubesresources/publications/857/?v=2

11. Lesson III - Annotation

    10 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...

    https://qubeshub.org/qubesresources/publications/856/?v=2

12. Optimal Foraging in Swirl

    08 Oct 2019 | Teaching Materials | Contributor(s):

    By Mary Elizabeth McWhirt¹, Emily Weigel¹

    Georgia Institute of Technology

    This lesson centers around the marginal value theorem (MVT, Charnov 1976), which describes how animals should forage in patches. It serves as a pre-lab to teach MVT basics, vectors, ANOVA, and...

    https://qubeshub.org/qubesresources/publications/1213/?v=2

13. Altruism Simulation Activity

    04 Oct 2019 | Teaching Materials | Contributor(s):

    By Nicole Chodkowski

    Radford University

    An altruism activity that uses a NetLogo altruism simulation.

    https://qubeshub.org/qubesresources/publications/1431/?v=1

14. Introduction to Data Management and Metadata using NEON aquatic macroinvertebrate data

    30 Sep 2019 | Teaching Materials | Contributor(s):

    By Kaitlin Stack Whitney

    Rochester Institute of Technology

    This lesson focuses on understanding metadata, the data about the data, using aquatic macroinvertebrate abundance and species information from a variety of NEON sampling locations.

    https://qubeshub.org/qubesresources/publications/1429/?v=1

15. Modeling the lac Operon to Understand the Regulation of Gene Expression in Prokaryotes

    27 Sep 2019 | Teaching Materials | Contributor(s):

    By Sam S Donovan

    University of Pittsburgh

    This resource is a recitation activity designed for an introductory biology course in which students explore a lac operon simulation (https://qubeshub.org/resources/phetlacoperon).

    https://qubeshub.org/qubesresources/publications/1427/?v=1

16. Variance Tutorial

    11 Sep 2019 | Teaching Materials | Contributor(s):

    By Claudia Neuhauser¹, David Phillip Schladt²

    1. University of Houston 2. University of Minnesota

    Numbers Count Excel resource

    https://qubeshub.org/qubesresources/publications/1417/?v=1

17. Testing for Hardy-Weinberg Equilibrium

    11 Sep 2019 | Teaching Materials | Contributor(s):

    By Claudia Neuhauser

    University of Houston

    Numbers Count Excel resource

    https://qubeshub.org/qubesresources/publications/1416/?v=1

18. Quartile Tutorial

    11 Sep 2019 | Teaching Materials | Contributor(s):

    By Claudia Neuhauser¹, David Phillip Schladt²

    1. University of Houston 2. University of Minnesota

    Numbers Count Excel resource

    https://qubeshub.org/qubesresources/publications/1406/?v=1

19. Confidence Intervals Tutorial

    09 Sep 2019 | Teaching Materials | Contributor(s):

    By Claudia Neuhauser¹, David Phillip Schladt²

    1. University of Houston 2. University of Minnesota

    Numbers Count Excel resource

    https://qubeshub.org/qubesresources/publications/754/?v=2

20. Yeast Cell Growth

    09 Sep 2019 | Teaching Materials | Contributor(s):

    By Claudia Neuhauser

    University of Houston

    Numbers Count resource using Excel for data analysis

    https://qubeshub.org/qubesresources/publications/755/?v=2