Collections

Resources around Invitation to Modeling paper

Post any resources here that stem from the Invitation to Modeling paper.

2 posts

Profile picture of Drew LaMar

Drew LaMar

3D modeling: Using the Protein Data Bank

The RCSB Protein Data Bank provides access to 3D structures of biological macromolecules (proteins, DNA, RNA and their various complexes), along with tools and resources for their visualization, exploration, analysis, and comparison. The presentation on Monday (Jul 24, 2017) will focus on the double helical model of DNA - how was this determined? what does it tell us about the functions of DNA and molecules that interact with it? how has it helped us design new  molecules?

An accompanying exercise guides you through hands-on exploration of data from the RCSB PDBusing the UCSF Chimera software. Explore the PDB-101 website for a variety of educational materials related to protein structures. Also check out the curricular modules available for use.

 

 

4 posts

Profile picture of Shuchismita Dutta

Shuchismita Dutta

Markdown Resources

Guides and cheat sheets to working with Markdown

2 posts

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Hayley Orndorf

Resources for working with R

This collection includes files and links to resources for getting started and working with R. 

3 posts

Profile picture of Hayley Orndorf

Hayley Orndorf

Erin's Discrete Difference Equations Resources

Resources developed for a course on Discrete Math Modeling with Biological Applications

2 posts

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Erin N. Bodine

Evo101 Resources

This is a collection of materials that were referenced during the Evo101 workshop on June 24th at the 2017 annual Evolution conference.

14 posts

Profile picture of Gabriela Hamerlinck

Gabriela Hamerlinck

Resources from the PDUE workshop

This collection contains resources that were mentioned during our PDUE workshop on June 23rd at Evolution 2017. If you have questions about any of the materials referenced here, please contact Gaby Hamerlinck.

14 posts

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Gabriela Hamerlinck

General

Collection for general posts

1 posts

Profile picture of Drew LaMar

Drew LaMar

Molecule of the Month

This is a collection of easy to read articles describing the shape/structure and functions of various molecules in atomic detail. Explore the collection of MotM features to learn about a molecular structural view of biology.

0 posts

Profile picture of Shuchismita Dutta

Shuchismita Dutta

Candice's Office

Things that Candice wants to reference. 

0 posts

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Candice Swift

ESTEEM Materials

Files and participant handouts for the ESTEEM session.

2 posts

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Anton E Weisstein

NSF INCLUDES Multi-Evaluation Conference

Photos and slides taken at the conference

1 posts

Profile picture of Tonya Maria Gerald-Goins

Tonya Maria Gerald-Goins

QUBES Help Articles

This collection contains different help articles for navigating the workshop group and utilizing the community tools available. 

3 posts

Profile picture of Hayley Orndorf

Hayley Orndorf

Helpful references/modules/tutorials for math modeling/applied math skills

Add handouts and videos for helpful references, modules, and tutorials for modeling skills.

1 posts

Profile picture of Carrie Diaz Eaton

Carrie Diaz Eaton

Getting students excited about applied math

Video vignettes, readings, and other resources for getting students excited about applied mathematics.

4 posts

Profile picture of Carrie Diaz Eaton

Carrie Diaz Eaton

Pedagogical Readings

5 posts

Profile picture of May Mei

May Mei

Projects for upper-level modeling courses

Projects for upper-level modeling courses.

This may include papers that students should/can read. Projects that students can follow along with in a course.

1 posts

Profile picture of Carrie Diaz Eaton

Carrie Diaz Eaton

Writing & Presentation Tips

A general paper with some tips and great references. 

21 posts

Profile picture of Blerta Shtylla

Blerta Shtylla

Funding and other logistic matters for undergraduate research

Collection of resources around funding and other logistic tips for undergraduate research

6 posts

Profile picture of Carrie Diaz Eaton

Carrie Diaz Eaton