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Genome Sequence Data in R using Biostrings (Swirl Lesson)

Author(s): Robert E Furrow

University of California, Davis

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Summary:
By the end of this lesson, students should be able to load FASTA files into R as DNAStringSets and use width() and alphabetFrequency(), combined with other functions like sum() and mean(), to evaluate genome assembly quality and nucleotide…

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By the end of this lesson, students should be able to load FASTA files into R as DNAStringSets and use width() and alphabetFrequency(), combined with other functions like sum() and mean(), to evaluate genome assembly quality and nucleotide frequencies. 

Licensed under CC Attribution-ShareAlike 4.0 International according to these terms

Version 1.0 - published on 09 Jun 2020 doi:10.25334/ADJT-CH40 - cite this

Keywords

  1. R programming language
  2. course-based undergraduate research experience
  3. Bioinformatics and Genomics
  4. CURE
  5. CUREs
  6. course-based research experiences (CUREs)
  7. STEM CUREs
  8. Comparative genomics
  9. Bioconductor

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