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Genome Sequence Data in R using Biostrings (Swirl Lesson)

Author(s): Robert E Furrow

University of California, Davis

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Summary:
By the end of this lesson, students should be able to load FASTA files into R as DNAStringSets and use width() and alphabetFrequency(), combined with other functions like sum() and mean(), to evaluate genome assembly quality and nucleotide…

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By the end of this lesson, students should be able to load FASTA files into R as DNAStringSets and use width() and alphabetFrequency(), combined with other functions like sum() and mean(), to evaluate genome assembly quality and nucleotide frequencies. 

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