Genome Sequence Data in R using Biostrings (Swirl Lesson)
Author(s): Robert E Furrow
University of California, Davis
1328 total view(s), 1296 download(s)
Summary:
By the end of this lesson, students should be able to load FASTA files into R as DNAStringSets and use width() and alphabetFrequency(), combined with other functions like sum() and mean(), to evaluate genome assembly quality and nucleotide…
Contents:
Genome_Sequence_Data_in_R.swc(SWC | 2 MB)
GenomeSequenceData_lab2.pdf(PDF | 254 KB)- GenomeSequenceData_lab2.Rmd(RMD | 19 KB)
- GenomeSequenceData_lab3.pdf(PDF | 780 KB)
- GenomeSequenceData_lab3.Rmd(RMD | 21 KB)
- GenomeSequenceData_LessonPlan.pdf(PDF | 85 KB)
- long_contig.RData(RDATA | 149 KB)
- strain1926.fasta(FASTA | 7 MB)
- Course website -- Genome Hunters
- License terms
Versions
| Version | Released | DOI Handle | Status | |
|---|---|---|---|---|
| 1.0 | Jun 09, 2020 | 10.25334/ADJT-CH40 | published | view version » |