You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Phage Comparative Genomics Lab Manual
    A lab manual containing detailed instructions for several bioinformatics tools (dot plots, Phamerator maps, phylogenetic trees, and gene content similarity), all of which enable students to perform...

    Keywords: phageCUREcourse-based research experiences (CUREs)Comparative genomicsSEA-PHAGES

    1544

    views

    649

    downloads

    0

    comments

    0

    adaptations

    The Importance of an ORCID
    This lesson introduces students and instructors to the use of ORCIDs (Open Researcher and Contributor ID), and walks students through the process of registering for an ORCID. This module also helps...

    Keywords: ORCIDidentitysocial justicecourse-based research experiences (CUREs)AttributionBCEENETdigitizationRepresentationhidden figuresdata democratizationrestorative practice

    696

    views

    184

    downloads

    0

    comments

    0

    adaptations

    An Introduction to Revealing Hidden Figures through Data Sleuthing
    In this introduction to hidden figures in natural history collections (NHCs), students will read an article that gives a unique historical perspective of museums and will then participate in a...

    Keywords: identitysocial justicenatural history collectionsAttributionBCEENETdigitizationRepresentationcourse-based undergraduate research experiences (CUREs)hidden figuresdata democratizationrestorative practice

    895

    views

    290

    downloads

    0

    comments

    0

    adaptations

    Introduction to Bionomia
    This module introduces students and instructors to Bionomia, a database that highlights the collectors and identifiers of natural history specimens. It aims to foster appreciation for these...

    Keywords: ORCIDidentitynatural history collectionscourse-based research experiences (CUREs)AttributionBCEENETRepresentationWikidatahidden figuresdata democratizationrestorative practicerestorative justiceBionomia

    459

    views

    65

    downloads

    0

    comments

    0

    adaptations

    REMNet Tutorial, R Part 5: Normalizing Microbiome Data in R 5.2.19
    Video on normalizing microbiome data from the Research Experiences in Microbiomes Network

    Keywords: geneticsstatisticsdata analysisgraphingRStudioVideoexperimental designR programming languagemicrobiomesstudent researchinterdisciplinary educationlimnologyeco-informaticsresearch in the classroomtidyverseWorking with datasetsREMNet

    1420

    views

    471

    downloads

    0

    comments

    0

    adaptations

    Evaluating the potential for immune escape: how likely is an antibody to protect against a specific SARS-CoV-2 variant?
    Commercial antibodies to the SARS-CoV-2 spike protein have been successfully used to treat people with COVID-19. Unfortunately, as the SARS-CoV-2 virus evolves, new variants have appeared that can...

    Keywords: course based undergraduate research experiencesBLASTmolecular modelingSARS-CoV-2antibodyNextstrainiCn3DSequence alignmentStructure alignment

    180

    views

    246

    downloads

    0

    comments

    0

    adaptations

    NSF Final Outcomes Report: Using the Lived Experiences and Narratives of Black Heritage and African American Gullah/Geechee to Learn Science Concepts
    This resource is a public report that provides final outcomes from the NSF funded project award # 1928832. The resources included in this report are outcomes from the catalyst project titled:...

    Keywords: biologyEquityenvironmental scienceScience curriculumdiversityinclusion#NGSSBlack representationbelongingusing lived experiences and narrativesBlack heritageGullah/Geechee

    1074

    views

    599

    downloads

    0

    comments

    0

    adaptations

    Identifiers in Digital Natural History Collections
    This is a collection of resources focusing on GUIDs (Globally Unique Identifiers) on what they are, what role they play in digital natural history collections, and how to incorporate them in...

    Keywords: idigbioStudy guidedata managementnatural history collectionsBLUEdigitized natural history collectionsidentifiers

    450

    views

    293

    downloads

    0

    comments

    0

    adaptations

    Biodiversity research using digitized, internet-based natural history collections
    Collections based research is a critical tool for organismal biology and biodiversity research. Yet natural history collections have a complicated past. This multi-class module examines the...

    Keywords: natural historycollectionsdigital resourcesOERBiodiversitynatural history museumsdigital collectionsbirdsBiodiversity Collections Network (BCoN)BLUE

    2275

    views

    1853

    downloads

    0

    comments

    0

    adaptations

    Using Digitized Collections-Based Data in Research: A Hands-On Crash Course in Ecological Niche Modeling
    Step-by-step, hands-on instruction on ways to access and download these specimen data, how to process climate layer data, and how to apply Maxent software to construct ecological niche models.

    Keywords: ecology labbiodiversity informaticsnatural history collectionsMicrosoft Excelbiodiversity collectionsRstatsecological niche modelingQGISENMToolsMaxent

    2158

    views

    624

    downloads

    0

    comments

    0

    adaptations

    21st Century STEM Workforce Skills
    This activity includes a leadership assessment and associated exercise to encourage the development of 21st Century STEM Skills.

    Keywords: collaborationteam scienceleadership skills

    1667

    views

    500

    downloads

    0

    comments

    0

    adaptations

    Small is Beautiful: OER for Cultural Change in a STEM Institution
    This report serves as a resource for faculty, staff, and students interested in co-creating Open Education Resources (OERs). In particular, we embrace OERs as an invitation to co-create, revise, ...
    1224

    views

    277

    downloads

    0

    comments

    0

    adaptations

    Choose Your Own Adventure: Control a Wildlife Disease Epidemic
    This educational game allows teams of students to try to control a simulated epidemic in United States snake populations using their epidemiological and ecological knowledge. It combines a "choose...

    Keywords: educational game

    1078

    views

    404

    downloads

    0

    comments

    0

    adaptations

    Passion-Driven Statistics
    E-book in .pdf format and customizable .iba format

    Keywords: statisticstextbook

    2923

    views

    980

    downloads

    0

    comments

    0

    adaptations

    Invasion, Restoration, and Response: Assessing changes in arthropod community assemblage using both parametric and non-parametric approaches
    This lesson, which is based around a recently published paper in the Journal of Ecological Applications, introduces students to both parametric and non-parametric approaches to statistical analysis...

    Keywords: ecologyANOVAInvasive Speciesspecies diversityquantitative analysisupper level wetland ecologysalt marshesarthropodsShannon diversity indexleast significant differences

    594

    views

    269

    downloads

    0

    comments

    0

    adaptations

    Atlas of Black Scholarship for Inclusive and Racially Diverse STEM Curricula – Volume I
    The contributions of Black scientists to the advancement of STEM are poorly represented in course materials. Here, we provide an Atlas of Black Scholarship to help Life Sciences and Chemistry...

    Keywords: BLACK SCIENTISTS IN STEMRACIALLY-RESPONSIVE PEDAGOGYBIOLOGY AND CHEMISTRY EDUCATIONDIVERSITY IN STEM CURRICULUM

    8803

    views

    1020

    downloads

    0

    comments

    0

    adaptations

    Ethics in ecological forecasting: four case-based teaching modules
    Working with ecological data often involves ethical considerations, particularly when data are applied to address societal needs. However, data science ethics are rarely included as part of...

    Keywords: data scienceremote sensingethicsuncertaintyecological forecastingindigenous knowledgetropical forestscultural competenceconflicts of interestmarine fisheriesflying foxesfreshwater qualityinequities

    341

    views

    514

    downloads

    0

    comments

    0

    adaptations

    Designing an Anti-Racist Syllabus
    The Alliance for the Black Community (ABC) developed a workshop to help faculty at California State University East Bay redesign their syllabi to incorporate anti-racist pedagogical practices.

    Keywords: teaching resourceundergraduate educationteaching philosophyUndergraduate STEM educationdiversity equity and inclusioncourse syllabus designAnti-racist practicesanti-racist pedagogy

    5791

    views

    3667

    downloads

    0

    comments

    0

    adaptations

    HITS: A Network to Create Inquiry-based Case Studies | BIOME 2022
    We created the NSF-funded High-throughput Discovery Science & Inquiry-based Case Studies for Today’s Students (HITS) Research Coordination Network to address this gap. HITS brings together...

    Keywords: case studiesHigh-throughput Discovery Science & Inquiry-based Case Studies for Today’s StudentsHigh-throughput (HT) approaches

    560

    views

    102

    downloads

    0

    comments

    0

    adaptations

    Save the Bees, Ditch the Plow: A lesson exploring how squash bee abundance is affected by varying levels of soil disturbance.
    The purpose of this lesson is to explore the effects that three varying degrees of soil disturbance has on the squash bee abundance that is observed. We will learn about the importance of...

    Keywords: beesmutualismpollinatorscommunity-based conservationno till farmingreduced tillage

    612

    views

    441

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search