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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Data Visualization
    This is an introduction to the idea of data visualization and the importance of presenting data for understanding.

    Keywords: data in the classroomdata visualization

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    Visualizing Global CO2 Emissions
    Using CO2 emissions data, students will learn how to visualize data with Tableau Public. The teaching materials are suitable for upper-level undergraduate courses on data analysis and research...

    Keywords: data visualizationResource Typeclimate change dataTableau

    3608

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    Communicating with Data: Digital Data Resources
    Students access, clean, configure, and standardize a dataset and create a relevant and scientifically valid data visualization to communicate science.

    Keywords: data in the classroomdata visualizationdigital resourcesbiodiversity informaticsbiodiversity collections

    1901

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    Remote sensing data processing – NEON airborne data
    Concepts of remote sensing and data logistics, and NEON remote sensing data are introduced. Students learn how to apply spatial data processing and visualization skills using R coding program to...

    Keywords: RlandscapebiomassProblem Solvingraster raster data processingspatial data visualizationvegetation indicescanopy

    2809

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    Investigating human impacts on stream ecology: Intro to R
    This resource uses the Human Impact on Stream Ecology data set, background and questions and provides students an very general introduction to using R. Students perform basic summary statistics and...

    Keywords: graphingdata visualizationR programming languagedescriptive statisticsundergraduate environmental science

    1554

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    BioGrapher
    BioGrapher is an Excel front-end for the AT&T GraphViz graphical visualization and layout package (http://www.graphviz.org/).

    Keywords: network theorygraph theoryphylogenetic trees

    629

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    49

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    GSD QUBES Resource Draft (1)
    This QUBES module is focused towards AP Environmental studies courses. It includes hypothesis testing, transect sampling, Shannon Diversity Index, and scatter plot and bar graph creation in excel.

    Keywords: Community EcologyField researchspidersMicrosoft ExcelShannon diversity index

    360

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    360

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    Working with Datasets in R swirl
    The goal of this lesson is to learn how to import datasets into R, understand variable types, make adjustments to variables, perform basic calculations, and begin data visualization. The exercise...

    Keywords: graphingRStudioclimate change datatidyverseWorking with datasets

    1786

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    1001

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    Working with spreadsheet-style data in Python with pandas and seaborn
    This 4-hour participatory live-coding workshop takes learners through the basics of programming in Python via the Jupyter Lab interface and culminates with exploration and visualization of...

    Keywords: datapythonopenSpreadsheetbicylepandasseabornmatplotlib

    1793

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    Understanding COVID-19 Biology to Design a Vaccine
    This multi-part case study introduces the reader to the SARS-CoV-2 virus, replication, and treatment. Additional worksheets introduce students to bioinformatics tools of 3-D protein visualization...

    Keywords: BLASTprotein structure modelingmolecular visualization and analysisCOVID19PDB

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    Downloading and Visualizing Project Data from the iNaturalist Database
    In this activity you will learn how to create a query, export, and download data from iNaturalist; load data into R; explore pollinator-plant interactions with R, and create heat map, bipartite,...

    Keywords: data visualizationplantsPlant EcologyPlant-insect interactionsnetwork#iNaturalistBLUEpollinators

    238

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    183

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    Communicating with Data: Infographic with Digital Data
    Working collaboratively in teams of 2-4 researchers, students engage in targeted projects to address critical information and research needs using digital biodiversity data.

    Keywords: databasesdata in the classroomundergraduate researchdigital collectionscourse-based research experiences (CUREs)biodiversity collections

    1822

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    Data-Driven Decision-Making: Antarctic Fisheries
    This is an entire module for a general education data science and ecology course. The module was originally designed as the fourth and final section of the course; the full course is openly...

    Keywords: population growthRStudiodata visualizationexponential growthlogistic growthR Markdownspatial dataocean sustainability4DEE FrameworkTraditional ecological knowledgecarrying capacityEcosystem Servicesmaximum sustainable yield

    308

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    259

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    Calling Bull in an Age of Big Data with R
    Use the calling bull course to introduce students to data, ethics, visualization, and R.

    Keywords: data scienceinformation literacydata literacyethicscallin bullcalling bull

    3132

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    3021

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    3D breast cancer tissue reconstruction
    This module allows students to follow a researcher as she discovers new features of breast cancer tissue architecture, using 3D reconstructions of histological specimens.

    Keywords: graphingdata visualizationbreast cancerDCIShistogramscentroidsums of squares

    2312

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    Box-of-Lessons Review, Fall 2022 - YouTube
    This video described the working group activities for BIOME Institute 2022 - Fall working group

    Keywords: carbohydratesproteinsNucleic Acid Structurebiomolecular structurebiomolecular visualizationProtein Data Bankresources @ Molecular CaseNetBIOME 2022pilotinglipidsbiomolecules

    1120

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    214

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    DCS 105 Calling Bull F24 Schedule
    Schedule overview for Bates College Course DCS 105 Calling Bull

    Keywords: datacalling bullmisinformationBates CollegeSchedule

    184

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    58

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    Tree Biomass and Phenology
    This lesson centers around understanding the connection of tree biomass and phenology with climate change. It uses both swirl and LearnR lessons in the R programming language to help students make...
    667

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    358

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    Exploring the population dynamics of wintering bald eagles through long-term data using R
    The purpose of this modification was to take the analyses that were done in Excel and have the students perform them using R. Students were not given any R code for this activity, as R code was...

    Keywords: Resources @ ESA - TIEEcase studyR programming languagepopulation ecologyendangered speciesconservation biologymigration ecologyggplot2

    1523

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    Data Management in Excel and R using National Ecological Observatory Network's (NEON) Small Mammal Data
    Students use small mammal data from the National Ecological Observatory Network to understand necessary steps of data management from data collection to data analysis by re-organising excel sheets...

    Keywords: codingR Markdowndata managementggplot2spreadsheetssmall mammals community dynamicsNEONResource TypeNational Ecological Observatory NetworkR softwaredplyr

    1574

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    1568

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