You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Nextstrain adaptations for Understanding COVID-19
    This resource introduces students to the use of Nextstrain and Nextclade to visualize the phylogeny of SARS-CoV-2 variants of concern and variants of interest. Terminology and an introduction to...

    Keywords: uniprotCOVID19SARS-CoV-2NextstrainNextcladeSpike glycoproteinVariants of Concern

    941

    views

    546

    downloads

    0

    comments

    0

    adaptations

    Flatten the Curve Course Module
    JavaScript isn't enabled in your browser, so this file can't be opened. Enable and reload.Some Word features can't be displayed in Google Docs and will be dropped if you make changesView...
    856

    views

    287

    downloads

    0

    comments

    0

    adaptations

    Tiny Earth: Studentsourcing antibiotic discovery
    Poster on Tiny Earth presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity

    Keywords: antibiotic-resistancesoil microbiologyTiny Earth

    870

    views

    200

    downloads

    0

    comments

    0

    adaptations

    COVID-19: Molecular Basis of Infection-ADAPTATION
    This case was written in Spring 2020 during the COVID-19 pandemic. It focuses on understanding the structure and interaction of the SARS-Cov-2 viral spike protein that facilitates infection in...

    Keywords: infectionvaccinemolecular visualization and analysisCOVID19PDBSARS-CoVMolecular Case Study

    1210

    views

    1633

    downloads

    0

    comments

    0

    adaptations

    Trauma-Informed Pedagogy: Teaching in Uncertain Times
    This free online seminar is designed for educators who are interested in learning about how they can teach their students despite the presence of trauma related to CoVID-19. Tuesday, April 28,...

    Keywords: uncertaintypandemic

    950

    views

    174

    downloads

    0

    comments

    0

    adaptations

    COVID-19: On the way to a vaccine
    This multi-part case study introduces the reader to the SARS-CoV-2 virus origins, the molecular basis of the infection, the development and severity of symptoms, and treatment.

    Keywords: BLASTprotein structure modelingmolecular visualization and analysisCOVID19PDB

    1038

    views

    3876

    downloads

    0

    comments

    0

    adaptations

    Understanding COVID-19 Biology to Design a Vaccine
    This multi-part case study introduces the reader to the SARS-CoV-2 virus, replication, and treatment. Additional worksheets introduce students to bioinformatics tools of 3-D protein visualization...

    Keywords: BLASTprotein structure modelingmolecular visualization and analysisCOVID19PDB

    1693

    views

    2164

    downloads

    0

    comments

    2

    adaptations

    The Process of Science
    These slides give an overview of the process of science in the context of the COVID-19 pandemic.

    Keywords: process of sciencescientific literacyvaccine literacyvaccine hesitancy

    215

    views

    186

    downloads

    0

    comments

    0

    adaptations

    Statistics with epidemiology of COVID-19
    Introduction into heat maps, non-parametric t-test and GIF (optional) in R using an original dataset on COVID-19 infections from different counties of New Jersey, USA. Suitable for students who...

    Keywords: Rundergraduate educationheat mapsCOVID19coronavirusSARS-CoV-2GIF

    1489

    views

    508

    downloads

    0

    comments

    0

    adaptations

    Integrating Community Ecology Into the Study of Parasites: Exploring the Effect of Host Behavior on Parasite Transmission Rates
    Organismal life cycles are often presented as a set of facts to memorize in undergraduate biology courses. This approach is cognitively demanding for students and fails to convey how central life...

    Keywords: statisticsspecies interactionsQuantitative reasoninggraphsCommunity EcologyParasitologyfood webs

    2561

    views

    208

    downloads

    0

    comments

    0

    adaptations

    Introductory Video and worksheets on Module 1 and 2 on "Sequence Similarity: An inquiry based and under the hood..."
    The video walks the students to complete Module 1 and 2 on Sequence Similarly and Alignment adapted from Tapprich (2019) and Hudson Alpha that teaches these modules within the context of the...

    Keywords: bioinformaticssequencingFASTANCBINIBLSEalgorithmsBLASTmultiple sequence alignmentsequence similarityBLOSUM scoring matrixCourseSource

    1144

    views

    1278

    downloads

    0

    comments

    0

    adaptations

    Big Data, Graphs, and Prediction
    In this activity, students are introduced to graphing and modeling data in a step-wise fashion. Real data of covid-19 deaths over time are used to incrementally ask students to fit the data to...

    Keywords: epidemiologygraphingLogarithmsexponential growthqbcccovidChoosing modelsCreate graphsInterpret graphsConcepts in Statistics

    1178

    views

    597

    downloads

    0

    comments

    0

    adaptations

    Small Organisms with Big Consequences: Understanding the Microbial World Around Us
    Creating a hands-on lab that conveys important information while simultaneously allowing for student autonomy can be difficult. This is particularly true for the field of microbiology, in which...

    Keywords: disease transmissionmicrobiologymicrobiomeliterature reviewPeer reviewPathogensHealth and WellnessThe Scientific Method

    2466

    views

    183

    downloads

    0

    comments

    0

    adaptations

    HSI - Student Research Journal - Vol.3 Issue 1 - Summer 2021
    The Headwaters Research Experience students have produced some fascinating research throughout our 10-week program. We encourage all to read their reports in our Vol. 3 - Issue 1 - Summer 2021...

    Keywords: scientific methodscience education

    575

    views

    84

    downloads

    0

    comments

    0

    adaptations

    Digital Laboratory Framework via Canvas for LIFE courses at Colorado State University
    The Life Lab Revisions team has piloted a Canvas-based approach to building scientific competencies in labs.

    Keywords: online learningvirtual lab

    1062

    views

    212

    downloads

    2

    comments

    0

    adaptations

    How does increasing atmospheric carbon dioxide disrupt ecological systems? Results from FACE experiments across the globe.
    This module synthesizes key findings from forested CO2 enrichment experiments over the last 3 decades. Students should have a basic working knowledge of climate change, ecosystem nutrient cycles...
    1535

    views

    668

    downloads

    0

    comments

    0

    adaptations

    2014-Murillo-EtAl-Vertical Transmission in a Two-Strain Model of Dengue Fever
    The model is used to show that lower transmission rates of DENV-2 Asian are sufficient for displacing DENV-2 American in the presence of vertical transmission.

    Keywords: Peruvector-host modeldengueepidemmiologyvertical transmission

    94

    views

    47

    downloads

    0

    comments

    0

    adaptations

    Correlation Between Shutdown Orders and CO Levels Across the United States
    Research was conducted in summer 2020 to analyze the effect of the shutdown orders due to COVID-19 pandemic on the CO levels across the United States. Since the shutdown orders during the...

    Keywords: airpollution

    274

    views

    57

    downloads

    0

    comments

    0

    adaptations

    HSI - Student Research Journal - Vol.1 Issue 4 - Fall 2020
    The Headwaters Research Experience students have produced some fascinating research throughout our 10-week program. We encourage all to read their reports in our Vol. 1 - Issue 4 - Fall 2020...

    Keywords: scientific methodscience education

    565

    views

    110

    downloads

    0

    comments

    0

    adaptations

    Going from student to medical doctor. The pathway to medicine with Abel Edossa and Dr. Oluwatoyin Weaver
    In this "lunch with a Scientist" episode, we interviewed a medical student and medical doctor to help us understand the path to medicine. Becoming a medical doctor is a very daunting task but with...

    Keywords: medicine

    439

    views

    79

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search