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Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Using Phyre2
    How to use Phrye2 and 3DLigandSite to computationally predict protein and active site structure and binding partners (substrates/cofactors/coenzymes).

    Keywords: videosbioinformaticsproteinsgenomicsyoutubephyre23DLigandSite

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    Simple Heat Maps with Morpheus
    Learn how to load an Excel file of raw data into Morpheus and change between relative and global scales.

    Keywords: Excelbioinformaticsgenomicsyoutubemorpheusheat maps

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    How to create "funny symbols" (aka math / statistical notation) in Microsoft Word / Office
    YouTube video on using statistical notation in Microsoft Word.

    Keywords: videosonline learninggenomicsyoutubestatistics symbols

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    Incubators: A community based model for improving the usability of bioinformatics learning resources
    Poster on Incubators, a NIBLSE and QUBES collaboration presented at Great Lakes Bioinformatics Conference - Chicago, IL

    Keywords: NIBLSEincubators

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    The Impact of Diversity on Group Productivity Within Online Faculty Mentoring Networks (FMNs) of Educators
    Poster presented at the University of Pittsburgh undergraduate research symposium on the impact of diversity on productivity in faculty mentoring networks.

    Keywords: faculty mentoring networksundergraduate researchdiversity

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    QUBES – A virtual synthesis center catalyzing change in undergraduate quantitative biology education
    Presentation about QUBES given at HHMI Constellation Meeting: Advancing science students mastery of quantitative skills.

    Keywords: quantitative biology education

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    A Team-Based Approach to Course Development Involving Undergraduate Researchers
    Development of an undergraduate laboratory course can be a challenge, because of the need to balance both logistical and pedagogical considerations. We piloted a team-based approach to developing...

    Keywords: student researchcourse development

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    Making Change Sustainable: Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE) Meeting Review
    The purpose of the meeting described in this review was to decide how best to ensure the sustainability of the Network for Integrating Bioinformatics into Life Science Education (NIBLSE; pronounced...

    Keywords: meetingsustainabilityfmnNIBLSEincubator

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    BioGraphI Guidelines for Interviews - Google Docs
    This document contains step-by-step instructions used by curriculum developers to plan, conduct, and publish interviews with scientists for the Biologist and Graph Interpretation (BioGraphI)...

    Keywords: Curriculum developmentInclusive teachinginterviewRole ModelsBioGraphIBioGraphI FMNcounterstereotypical scientist

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    BioGraphI Interview Invitation (Sample Message) - Google Docs
    This document contains templates that help curriculum developers correspond with potential interviewees for the Biologist and Graph Interpretation (BioGraphI) Network. Each interview is featured in...

    Keywords: researchgraph interpretationdata literacyCurriculum developmentInclusive teachinginterviewRole ModelsBioGraphIBioGraphI FMNcounterstereotypical scientist

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    BioGraphI Considerations for Selecting a Potential Interviewee - Google Docs
    This document includes resources and advice to help curriculum developers choose a scientist to interview for the Biologist and Graph Interpretation (BioGraphI) Network. Each interview is featured...

    Keywords: researchgraph interpretationdata literacyCurriculum developmentInclusive teachinginterviewRole ModelsBioGraphIBioGraphI FMNcounterstereotypical scientist

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    Instructions for access to BioGraphI PrePost-Lesson Student Survey - Google Docs
    This document contains instructions for curriculum developers to invite students to complete a survey before and following their participation in curriculum produced by the Biologists and Graph...

    Keywords: assessmentgraph interpretationeducation researchdata literacylearning outcomeslearning objectivesRole ModelsBioGraphIBioGraphI FMNcounterstereotypical scientist

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    BioGraphI Student Learning Outcomes Assessment Tool - Google Docs
    This document contains the student learning outcomes that guide the development of curriculum produced by the Biologists and Graph Interpretation (BioGraphI) Network and the survey instrument used...

    Keywords: assessmentgraph interpretationeducation researchdata literacylearning outcomeslearning objectivesRole ModelsBioGraphIBioGraphI FMNcounterstereotypical scientist

    56

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    Learn Biological Sciences and Environmental Science through biodiversity and pollution
    Biodiversity or biological diversity is the variety of and variability of biological life on Earth. Biodiversity is existing due to variation among living organisms from different sources air,...

    Keywords: databiologydata scienceBiodiversityclimateenvironmental scienceSpeciespollutionanalyze data

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    Evaluation of DEIJ practices in learning spaces
    Our Accelerating Systemic Change Network (ASCN) Working Group 5 is a group which focuses on DEIJ - Diversity, Equity, Inclusive and Justice. Taking into account the evolution of learning...

    Keywords: stemassessmentUndergraduatescienceFacultyriosDEIJASCNlearning space

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    TEE Network -Transforming Ecology Education to Four Dimensional Network (RCN-UBE Introduction)
    The TEE network explores the unique role of a disciplinary society in encouraging education innovation and motivating a network of core volunteer leaders and distributed faculty in multiple...

    Keywords: RCN-UBE Introduction

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    BioGraphI Interview Questions - Google Docs
    This document contains and describes the interview questions used in interviews conducted by the Biologist and Graph Interpretation (BioGraphI) Network. Curriculum developers use it to prepare for...

    Keywords: researchgraph interpretationdata literacyinterviewRole ModelsBioGraphIBioGraphI FMNcounterstereotypical scientist

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    BioGraphI OER Lesson Guide Template - Google Docs
    This template of a lesson plan was developed for the Biologists and Graph Interpretation (BioGraphI) Network. Curriculum developers use it to make a BioGraphI module.

    Keywords: Curriculum developmentcurriculum designBioGraphIBioGraphI FMN

    539

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    HITS: A Network to Create Inquiry-based Case Studies | BIOME 2022
    We created the NSF-funded High-throughput Discovery Science & Inquiry-based Case Studies for Today’s Students (HITS) Research Coordination Network to address this gap. HITS brings together...

    Keywords: case studiesHigh-throughput Discovery Science & Inquiry-based Case Studies for Today’s StudentsHigh-throughput (HT) approaches

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    Critical inquiry for inclusive teaching of statistics
    Professional development workshop slides to help curate conversations in teaching statistics with a critical inquiry lens.

    Keywords: statisticsdata sciencefaculty developmentInclusive teachingbuilds

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