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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Populus: Simulations of Population Biology
    Link to Populus Software

    Keywords: simulationpopulation growthpopulus

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    Datasets for Whitlock & Schluter's "The Analysis of Biological Data"
    Link to data sets used in The Analysis of Biological Data . All data are in CSV format.

    Keywords: The Analysis of Biological DataResources @ QUBES - Data

    1346

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    Modeling: A Primer - The crafty art of making, exploring, extending, transforming, tweaking, bending, disassembling, questioning, and breaking models
    Explore how to use, analyze, and criticize some important and historically influential models in biology in this text only module.

    Keywords: modelingsimulationmoduleResources @ BioQUESTtextbookmodulesmathematical modeling

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    Visual Datasets
    This downloadable module features imaginary animals and plants, and is meant to aid students in thinking about questions of evolution, classification, and phylogeny.

    Keywords: moduleEvolutionResources @ BioQUESTonlinephylogenyonline learning

    2138

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    Teacher Guide: Math and Statistics
    Topics include measures of average (mean, median, and mode), variability (range and standard deviation), uncertainty (standard error and 95% confidence interval), Chi-square analysis, student...

    Keywords: Resources @ HHMI - BioInteractiveStatistics and Mathteacher guide

    1948

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    209

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    Mendelian Genetics, Probability, Pedigree, and Chi-Squared Statistics
    A lesson that requires students to work through a series of questions pertaining to the genetics of sickle cell disease and its relationship to malaria.

    Keywords: geneticsResources @ HHMI - BioInteractiveScientific ProcessStatistics and Mathmendelian inheritance

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    Allele and Phenotype Frequencies in Rock Pocket Mouse Populations
    A lesson that uses real rock pocket mouse data collected by Dr. Michael Nachman and his colleagues to illustrate the Hardy-Weinberg principle.

    Keywords: EvolutionResources @ HHMI - BioInteractiveNatural SelectionScientific ProcessStatistics and Mathevolution of populations

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    AIM-UP! Reading scientific literature module
    Designed to span 4 one-hour lectures, this module focuses upon developing the skill of thorough and critical reading of scientific literature.

    Keywords: Resources @ AIM-UP!primary literaturereadingscientific literatureliteraturereading comprehensioncritical reading

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    AIM-UP! GIS and bats lesson
    This lesson introduces the use of GIS (geographic information systems) in the study of biological questions, using bats as the model organism. This activity requires access to GIS software.

    Keywords: ecologyResources @ AIM-UP!GISgeographical information systemsbats

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    AIM-UP! Coal balls lesson
    In this activity, students learn about ancient plant life and climate change by examining coal balls. In addition to the lesson itself, information is provided on where to purchase coal ball peel...

    Keywords: ecologybotanyResources @ AIM-UP!climate changeglobal warmingfossilcoalpaleontologypaleobotany

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    Teaching Notes for Implementation of Gene Expression in Stem Cells
    Teaching notes for implementing Data Nugget: Gene Expression in Stem Cells in a introductory biology lab.

    Keywords: Resources @ Data Nuggetsteaching notes

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    Using: "Winter Is Coming! Can you Handle the Freeze?" In an Intro BIO lecture
    I use Team Based Learning in this course, students are in permanent groups and work together on Challenge Questions each class after I give a short lecture. This Nugget was used in place of regular...

    Keywords: graphing

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    407

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    Integrating Natural History Collections into Undergraduate Education: Creating the Resources and Growing the Community
    Presentation given at SPNHC

    Keywords: idigbio

    1256

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    Confronting the challenges of bringing research data into undergraduate classrooms using online faculty mentoring networks
    Poster on using ecological research data in undergraduate courses

    Keywords: Ecological Society of Americafmn

    1470

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    Incubators: A community based model for improving the usability of bioinformatics learning resources
    Poster on Incubators, a NIBLSE and QUBES collaboration presented at Great Lakes Bioinformatics Conference - Chicago, IL

    Keywords: NIBLSEincubators

    1360

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    Distributed creation, community guidance, and OER development: current models and emerging practices
    Presented at the BioQUEST 2016 Summer Workshop

    Keywords: OERcollaborative writing

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    Modifying HHMI Anole Resources: Using Image J to Quantify Ecomorphs and Tree-thinking to Explore Evolutionary Hypotheses
    I recombined the HHMI resources to have the students perform the image analysis from Virtual Lab 1 in Image J and explore the evolutionary principles in the Lizard Phenology modules

    Keywords: Evolutionorganismal biologytool:imagejSpeciationTree thinkingDNAphylogeny and classification

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    Calculating Lifetime Cancer Risk Resulting from DNA Replication
    An expanded case study adapted from an HHMI Data Point on Cell Division and Cancer Risk using Figure 1 from Tomasetti, C. and Vogelstein, B. (2015).

    Keywords: cancerScientific ProcessStatistics and MathScientific Methodologybiology of cellscell growth and divisionHigh School

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    Expanded Graphing Tutorial
    The tutorial has two approaches for teaching about graph building and choosing the appropriate graph for different data types, a scaffolding approach and a exploration approach which can be...

    Keywords: Scientific ProcessStatistics and MathScientific MethodologyHigh School

    1633

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    454

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    Visualization: Quantitative reasoning via image analysis, networks, topology, generative models, and 3D rendering
    Resource from the 2015 BioQUEST Summer Workshop
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