Support

Support Options

  • Knowledge Base

    Find information on common questions and issues.

  • Support Messages

    Check on the status of your correspondences with members of the QUBES team.

Contact Us

About you
About the problem

Tags: bioinformatics

All Categories (1-20 of 219)

  1. A 360˚ View of COVID-19

    30 Nov 2021 | Teaching Materials | Contributor(s):

    By Nikolaos Tsotakos1, Victoria Del Gaizo Moore2, Lisa Z. Scheifele3, Michael J. Wolyniak4, Joseph W. Chihade5, Joseph J. Provost6, Jennifer A. Roecklein-Canfield*7

    1. Penn State Harrisburg 2. Elon University 3. Loyola University Maryland 4. Hampden-Sydney College 5. Carleton College 6. University of San Diego 7. Simmons University

    In March 2020, institutions underwent a massive transition to distance learning as a result of the COVID-19 pandemic. With so little time to devise new materials to maximize learning in the new...

    https://qubeshub.org/publications/2790/?v=1

  2. A CRISPR/Cas Guide RNA Design In Silico Activity

    29 Aug 2021 | Teaching Materials | Contributor(s):

    By Leigh Ann Samsa*1, Linnea Andersen1, Adam Groth1, Carlos Goller1

    North Carolina State University

    CRISPR biotechnologies inspired by the Clustered Regularly Interspaced Short Palindromic Repeat RNA-guided nuclease adaptive bacterial immune system have revolutionized biology research and become...

    https://qubeshub.org/publications/2701/?v=1

  3. A CURE for Salmonella: A Laboratory Course in Pathogen Microbiology and Genomics

    15 Sep 2021 | Teaching Materials | Contributor(s):

    By Sophie K. Jurgensen1, Joseph Harsh2, James B. Herrick*2

    1. James Madison University, Louisiana State University 2. James Madison University

    Rapid advances in genomics and bioinformatics, the vast amount of data generated by next-generation sequencing, and the penetration of the ‘-omics’ into many areas of biology have...

    https://qubeshub.org/publications/2749/?v=1

  4. A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!

    28 Feb 2019 | Teaching Materials | Contributor(s):

    By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5

    1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University

    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    https://qubeshub.org/publications/1092/?v=1

  5. A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!

    07 Jun 2019 | Teaching Materials | Contributor(s):

    By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5

    1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University

    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    https://qubeshub.org/publications/1092/?v=2

  6. A Fun Introductory Command Line Lesson: Next Generation Sequencing Quality Analysis with Emoji!

    30 Aug 2021 | Teaching Materials | Contributor(s):

    By Rachael M. St. Jacques †1, William M. Maza †1, Sabrina D. Robertson2, Andrew Lonsdale3, Caylin S. Murray1, Jason J. Williams4, Ray A. Enke*1

    1. James Madison University 2. University of North Carolina Chapel Hill 3. University of Melbourne 4. Cold Spring Harbor Laboratory, DNA Learning Center

    Radical innovations in DNA sequencing technology over the past decade have created an increased need for computational bioinformatics analyses in the 21st century STEM workforce. Recent...

    https://qubeshub.org/publications/2727/?v=1

  7. A Hands-on Introduction to Hidden Markov Models

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Tony Weisstein1, Elena Gracheva2, Zane Goodwin2, Zongtai Qi2, Wilson Leung2, Christopher D. Shaffer2, Sarah C.R. Elgin2

    1. Truman State University 2. Washington University in St. Louis

    A lesson in which students will understand the basic structure of an HMM, the types of data used in ab initio gene prediction, and its consequent limitations.

    https://qubeshub.org/publications/999/?v=1

  8. Aging and Circular RNAs

    13 Apr 2018 | Teaching Materials | Contributor(s):

    By Pedro Miura

    University of Nevada, Reno

    A science FIT seminar presented to incoming freshmen at UNR

    https://qubeshub.org/publications/480/?v=1

  9. Amanda Stahlke

    https://qubeshub.org/community/members/19077

  10. An Introduction to the R Programming Environment

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By K. A. Garrett1, P. D. Esker1, A. H. Sparks1

    Kansas State University

    An online module introducing students and biologists to R, published in American Phytopathological Society

    https://qubeshub.org/publications/1002/?v=1

  11. An Introduction to the R Programming Environment

    02 Jun 2021 | Teaching Materials | Contributor(s):

    By K. A. Garrett1, P. D. Esker1, A. H. Sparks1

    Kansas State University

    An online module introducing students and biologists to R, published in American Phytopathological Society

    https://qubeshub.org/publications/1002/?v=2

  12. An undergraduate bioinformatics curriculum that teaches eukaryotic gene structure

    31 Aug 2021 | Teaching Materials | Contributor(s):

    By Meg M. Laakso1, Leocadia V. Paliulis2, Paula Croonquist3, Brianna Derr2, Elena Gracheva4, Charles Hauser5, Carina Howell6, Christopher Jones7, Jacob D. Kagey8, Jennifer Kennell9, S. Catherine Silver Key10, Hemlata Mistry11, Srebrenka Robic12, Jamie Sanford13, Marisol Santisteban14, Chiyedza Small15, Rebecca Spokony16, Joyce Stamm17, Melanie Van Stry18, Wilson Leung4, Sarah C.R. Elgin4

    1. Eastern University 2. Bucknell University 3. Anoka-Ramsey Community College 4. Washington University in St. Louis 5. St. Edward’s University 6. Lock Haven University 7. Moravian College 8. University of Detroit Mercy 9. Vassar College 10. North Carolina Central University 11. Widener University 12. Agnes Scott College 13. Ohio Northern University 14. The University of North Carolina at Pembroke 15. Medgar Evers College, The City University of New York 16. Baruch College, The City University of New York 17. University of Evansville 18. Lane College

    Gene structure, transcription, translation, and alternative splicing are challenging concepts for many undergraduates studying biology. These topics are typically covered in a traditional lecture...

    https://qubeshub.org/publications/2592/?v=1

  13. Andrew Colasanti

    https://qubeshub.org/community/members/24180

  14. Anne M Brown

    https://qubeshub.org/community/members/10267

  15. Arianna Krinos

    https://qubeshub.org/community/members/16399

  16. Aubrey Allen Smith

    https://qubeshub.org/community/members/3661

  17. Babar Usman

    https://qubeshub.org/community/members/23464

  18. Barry Grant

    https://qubeshub.org/community/members/5944

  19. Behavioral Genetics: Investigating the genes of a complex phenotype in fruit flies

    03 Jan 2019 | Teaching Materials | Contributor(s):

    By Craig E. Stanley, Jr., Charles Hadley S. King, IV, Michelle Thornton, Rob J. Kulathinal

    Introductory genetics laboratory published as GSA Learning Resource

    https://qubeshub.org/publications/988/?v=1

  20. Ben Waldron

    https://qubeshub.org/community/members/3204