Resources (1-20 of 34)

1. Writing Microbiology Resource Announcements (MRA)

   21 Feb 2024 | Teaching Materials | Contributor(s):

   By Arturo Diaz¹, Julia Lee-Soety², Shima Chaudhary³, Denise Monti⁴, Viknesh Sivanathan⁵, Richard Pollenz⁶, Alison Kanak⁷, Amy B Sprenkle⁸, Andrea R. Beyer⁹, Bridgette Kirkpatrick, Carole Twichell¹⁰, Christine A. Byrum¹¹, Deborah Tobiason¹², Dustin Edwards¹³, Elizabeth Godin¹⁴, Emily Savage, Heather Lindberg¹⁵, Holly Nance¹⁶, Jessica Rocheleau¹⁷, Julie Torruellas Garcia¹⁸, Kathryn E Dye¹⁹, Kristen Butela²⁰, Lisa Bono²¹, Matthew David Mastropaolo²², Megan Dennis, Naomi Rowland²³, Quinn Vega²⁴, Regina V Alvarez²⁵, Rocky Ng, Ruth Plymale²⁶, Sergei A Markov²⁷, Steven M Caruso²⁸, Tara Turley Stoulig, Tiara Perez²⁹, Vassie Ware³⁰, Veronique Delesalle, Adam D Rudner, Beth Wilkes³¹, Christa Bancroft, Christine Fleischacker³², Eric Michael Engstrom³³, Frederick N Baliraine³⁴, Hari Kotturi³⁵, Jacqueline Washington³⁶, James Shanks³⁷, Lee E Hughes³⁸, Matthew Fisher³⁹, Pamela Lucas Connerly⁴⁰, Patricia Waikel⁴¹, Sarah Reardon, Sean Coleman⁴², Shallee Page⁴³, Swati Agrawal⁴⁴, Tamarah Adair, Thomas Ndolo³, Alexandra Jerby⁴⁵, Amanda Freise⁴⁶, Amaya Maria Garcia Costas⁴⁷, Christy Fillman⁴⁸, Dane Bowder⁴⁹, Daniel Eric Westholm, Daniel Williams, Ellen Wisner⁵⁰, Jennifer Guerrero⁵¹, Joseph Stukey⁵², Karen Klyczek⁵³, Kari Clase⁵⁴, Maria Gainey⁵⁵, MARY ASI-TIM AYUK⁵⁶, Mauricio Antunes³⁸, Rebecca Bortz⁵⁷, Steven Cresawn⁵⁸, Suparna Bhalla⁵⁹, Victoria Jane Frost⁶⁰, C. Nicole Sunnen⁶¹, Mitchell Balish⁶², Brett Pickett⁶³, Claire Rinehart²³, Luis Actis⁶², Megan Valentine⁶⁴, Alyssa Gleichsner⁶⁴, Melissa Harrison⁶⁵, Jennifer Broderick⁶⁶, Sally Molloy⁶⁷, Gerry Zegers⁶⁸, Jared Stees⁶⁹, Kara Thoemke⁷⁰, Rodney King²³, Liz Williams⁷¹, Jon Mitchell⁷², John Rombold⁷³, Kissaou Tchedre⁷⁴, Edwin Vazquez⁷⁵, Sharon Gusky⁷⁶, Elvira Eivazova⁷⁷, Dominique Dotson⁷⁸, Alejandra Mussi⁷⁹, Jacob Kagey⁸⁰, Randy DeJong⁸¹, Catherine Ward⁸², Rebekah Hare⁸³, Kathryn Kohl⁶⁰, Imade Nsa⁸⁴, Tejas Bouklas⁴⁶, Sarah Tolsma⁸⁵, Charlotte Berkes⁸⁶, Melody Neely⁶⁷, Aimee Danley²⁰

   1. La Sierra University 2. Saint Joseph’s University 3. South Texas College 4. University of North Florida 5. Howard Hughes Medical Institute 6. University of South Florida 7. University of North Georgia 8. Salem State University 9. Virginia State University 10. Collin College 11. College of Charleston 12. Carthage College 13. Tarleton State University 14. Marist College 15. Virginia Western Community College 16. College of Coastal Georgia 17. University of Massachusetts, Amherst 18. Nova Southeastern University 19. Mount St. Mary's University 20. University of Pittsburgh 21. Texas Tech University 22. Neumann University 23. Western Kentucky University 24. Montclair State University 25. Dominican University New York 26. Ouachita Baptist University 27. Austin Peay State University 28. University of Maryland, Baltimore County 29. Benedictine University 30. Lehigh University 31. NHTI- Concord's Community College 32. University of Mary 33. Monmouth College 34. LeTourneau University 35. University of Central Oklahoma 36. Nyack College 37. University of California Santa Cruz 38. University of North Texas 39. Oregon Coast Community College 40. Indiana University Southeast 41. Florida International University 42. Wartburg College 43. Franklin Pierce University 44. University of Mary Washington 45. Wingate 46. University of California, Los Angeles 47. Colorado State University-Pueblo 48. University of Colorado, Boulder 49. Doane University 50. University of North Carolina Charlotte 51. University of Texas at San Antonio 52. Hope College 53. University of Wisconsin-River Falls 54. Purdue University 55. Western Carolina University 56. Howard University 57. 207580856 58. James Madison University 59. Mount Saint Mary College 60. Winthrop University 61. Saint Joseph's University 62. Miami University 63. Brigham Young University 64. State University of New York-Plattsburgh 65. Cabrini University 66. Thiel College 67. University of Maine, Honors College 68. University of Maine, Machias 69. Santa Fe College 70. College of St. Scholastica 71. University of Ottawa 72. Northern State University 73. Northwest Indian College 74. Austin Community College 75. University of Puerto Rico at Cayey 76. Northwestern Connecticut Community Colleges 77. Columbia State Community College 78. Coppin State University 79. Universidad Nacional de Rosario 80. University of Detroit Mercy 81. Calvin University 82. Durham Technical Community College 83. Gonzaga University 84. University of Lagos 85. Northwestern College 86. Merrimack College

   This resources provides a framework for students to write a Microbiology Resource Announcement, collaboratively.

   https://qubeshub.org/publications/2038/?v=6

2. Writing Microbiology Resource Announcements (MRA)

   30 Nov 2023 | Teaching Materials | Contributor(s):

   By Arturo Diaz¹, Julia Lee-Soety², Shima Chaudhary³, Denise Monti⁴, Viknesh Sivanathan⁵, Richard Pollenz⁶, Alison Kanak⁷, Amy B Sprenkle⁸, Andrea R. Beyer⁹, Bridgette Kirkpatrick, Carole Twichell¹⁰, Christine A. Byrum¹¹, Deborah Tobiason¹², Dustin Edwards¹³, Elizabeth Godin¹⁴, Emily Savage, Heather Lindberg¹⁵, Holly Nance¹⁶, Jessica Rocheleau¹⁷, Julie Torruellas Garcia¹⁸, Kathryn E Dye¹⁹, Kristen Butela²⁰, Lisa Bono²¹, Matthew David Mastropaolo²², Megan Dennis, Naomi Rowland²³, Quinn Vega²⁴, Regina V Alvarez²⁵, Rocky Ng, Ruth Plymale²⁶, Sergei A Markov²⁷, Steven M Caruso²⁸, Tara Turley Stoulig, Tiara Perez²⁹, Vassie Ware³⁰, Veronique Delesalle, Adam D Rudner, Beth Wilkes³¹, Christa Bancroft, Christine Fleischacker³², Eric Michael Engstrom³³, Frederick N Baliraine³⁴, Hari Kotturi³⁵, Jacqueline Washington³⁶, James Shanks³⁷, Lee E Hughes³⁸, Matthew Fisher³⁹, Pamela Lucas Connerly⁴⁰, Patricia Waikel⁴¹, Sarah Reardon, Sean Coleman⁴², Shallee Page⁴³, Swati Agrawal⁴⁴, Tamarah Adair, Thomas Ndolo³, Alexandra Jerby⁴⁵, Amanda Freise⁴⁶, Amaya Maria Garcia Costas⁴⁷, Christy Fillman⁴⁸, Dane Bowder⁴⁹, Daniel Eric Westholm, Daniel Williams, Ellen Wisner⁵⁰, Jennifer Guerrero⁵¹, Joseph Stukey⁵², Karen Klyczek⁵³, Kari Clase⁵⁴, Maria Gainey⁵⁵, MARY ASI-TIM AYUK⁵⁶, Mauricio Antunes³⁸, Rebecca Bortz⁵⁷, Steven Cresawn⁵⁸, Suparna Bhalla⁵⁹, Victoria Jane Frost⁶⁰, C. Nicole Sunnen⁶¹, Mitchell Balish⁶², Brett Pickett⁶³, Claire Rinehart²³, Luis Actis⁶², Megan Valentine⁶⁴, Alyssa Gleichsner⁶⁴, Melissa Harrison⁶⁵, Jennifer Broderick⁶⁶, Sally Molloy⁶⁷, Gerry Zegers⁶⁸, Jared Stees⁶⁹, Kara Thoemke⁷⁰, Rodney King²³, Liz Williams⁷¹, Jon Mitchell⁷², John Rombold⁷³, Kissaou Tchedre⁷⁴, Edwin Vazquez⁷⁵, Sharon Gusky⁷⁶, Elvira Eivazova⁷⁷, Dominique Dotson⁷⁸, Alejandra Mussi⁷⁹, Jacob Kagey⁸⁰, Randy DeJong⁸¹, Catherine Ward⁸², Rebekah Hare⁸³, Kathryn Kohl⁶⁰, Imade Nsa⁸⁴, Tejas Bouklas⁴⁶, Sarah Tolsma⁸⁵, Charlotte Berkes⁸⁶, Melody Neely⁶⁷, Aimee Danley²⁰

   1. La Sierra University 2. Saint Joseph’s University 3. South Texas College 4. University of North Florida 5. Howard Hughes Medical Institute 6. University of South Florida 7. University of North Georgia 8. Salem State University 9. Virginia State University 10. Collin College 11. College of Charleston 12. Carthage College 13. Tarleton State University 14. Marist College 15. Virginia Western Community College 16. College of Coastal Georgia 17. University of Massachusetts, Amherst 18. Nova Southeastern University 19. Mount St. Mary's University 20. University of Pittsburgh 21. Texas Tech University 22. Neumann University 23. Western Kentucky University 24. Montclair State University 25. Dominican University New York 26. Ouachita Baptist University 27. Austin Peay State University 28. University of Maryland, Baltimore County 29. Benedictine University 30. Lehigh University 31. NHTI- Concord's Community College 32. University of Mary 33. Monmouth College 34. LeTourneau University 35. University of Central Oklahoma 36. Nyack College 37. University of California Santa Cruz 38. University of North Texas 39. Oregon Coast Community College 40. Indiana University Southeast 41. Florida International University 42. Wartburg College 43. Franklin Pierce University 44. University of Mary Washington 45. Wingate 46. University of California, Los Angeles 47. Colorado State University-Pueblo 48. University of Colorado, Boulder 49. Doane University 50. University of North Carolina Charlotte 51. University of Texas at San Antonio 52. Hope College 53. University of Wisconsin-River Falls 54. Purdue University 55. Western Carolina University 56. Howard University 57. 207580856 58. James Madison University 59. Mount Saint Mary College 60. Winthrop University 61. Saint Joseph's University 62. Miami University 63. Brigham Young University 64. State University of New York-Plattsburgh 65. Cabrini University 66. Thiel College 67. University of Maine, Honors College 68. University of Maine, Machias 69. Santa Fe College 70. College of St. Scholastica 71. University of Ottawa 72. Northern State University 73. Northwest Indian College 74. Austin Community College 75. University of Puerto Rico at Cayey 76. Northwestern Connecticut Community Colleges 77. Columbia State Community College 78. Coppin State University 79. Universidad Nacional de Rosario 80. University of Detroit Mercy 81. Calvin University 82. Durham Technical Community College 83. Gonzaga University 84. University of Lagos 85. Northwestern College 86. Merrimack College

   This resources provides a framework for students to write a Microbiology Resource Announcement, collaboratively.

   https://qubeshub.org/publications/2038/?v=5

3. Writing Microbiology Resource Announcements (MRA)

   26 Jan 2023 | Teaching Materials | Contributor(s):

   By Arturo Diaz¹, Julia Lee-Soety², Shima Chaudhary³, Denise L Monti⁴, Viknesh Sivanathan⁵, Richard Pollenz⁶

   1. La Sierra University 2. Saint Joseph’s University 3. South Texas College 4. University of Alabama at Birmingham 5. Howard Hughes Medical Institute 6. University of South Florida

   This resources provides a framework for students to write a Microbiology Resource Announcement, collaboratively.

   https://qubeshub.org/publications/2038/?v=4

4. Build Multiomic and Visualization Skills in Bioscience Lecture

   19 Nov 2022 | Teaching Materials | Contributor(s):

   By Xyanthine Parillon

   student

   This resource promotes inclusive learning by using all free platforms to extend the central dogma to an applied experience. Genomics is focused on with literature reviews that are performed to...

   https://qubeshub.org/publications/3574/?v=1

5. Lesson III - Annotation

   30 Sep 2022 | Teaching Materials | Contributor(s):

   By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

   1. Georgetown University 2. Gallaudet University 3. Cabrini University

   Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...

   https://qubeshub.org/publications/856/?v=4

6. Lesson II - Databases

   30 Sep 2022 | Teaching Materials | Contributor(s):

   By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

   1. Georgetown University 2. Gallaudet University 3. Cabrini University

   Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson II introduces the principal databases for microbial...

   https://qubeshub.org/publications/855/?v=3

7. Lesson VI - The Community Science Project

   30 Sep 2022 | Teaching Materials | Contributor(s):

   By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

   1. Georgetown University 2. Gallaudet University 3. Cabrini University

   Genome Solver's Community Science Project was developed as a way to use the skills taught in the previous lessons. We're asking members of the community to provide instances of potential phage...

   https://qubeshub.org/publications/859/?v=3

8. Lesson II - Databases

   30 Sep 2022 | Teaching Materials | Contributor(s):

   By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

   1. Georgetown University 2. Gallaudet University 3. Cabrini University

   Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson II introduces the principal databases for microbial...

   https://qubeshub.org/publications/855/?v=2

9. The Genomics Education Partnership: Democratizing Genomics Research Experiences Nationwide

   16 Jul 2022 | Teaching Materials | Contributor(s):

   By Katie M. Sandlin¹, Laura K. Reed²

   1. Genomics Education Partnership & BioQUEST 2. The University of Alabama

   This poster provides a general overview of the Genomics Education Partnership (GEP), and information on our Diversity, Equity, and Inclusion efforts are outlined in the accompanying video.

   https://qubeshub.org/publications/3452/?v=1

10. Advances in Genome Sequencing with Nathan Olson

    25 Apr 2022 | Teaching Materials | Contributor(s):

    By Nathan Olson¹, Megan Seifert²

    1. National Institute of Standards and Technology 2. Headwaters Science Institute

    In this Lunch with a Scientist episode, we discuss Genome Sequencing and Bioinformatics with National Institute of Standards and Technology (NIST) biologist Nate Olson, Ph.D.

    https://qubeshub.org/publications/2937/?v=1

11. Applying phylogenetic tree building in MEGA X to forensic applications for identifying unknown specimens

    10 Feb 2022 | Teaching Materials | Contributor(s):

    By Nicholas Lorusso¹, Maria Shumskaya², Denise Gemmellaro²

    1. University of North Texas at Dallas 2. Kean University

    This exercise is designed to guide a learner through the construction of phylogenetic trees as a means of addressing research questions in forensic science such as the identification of previously...

    https://qubeshub.org/publications/2567/?v=2

12. Pre-lesson: Introduction to BLAST

    22 Sep 2021 | Teaching Materials | Contributor(s):

    By Sarah Prescott

    BioQUEST - Executive Director / UNH - Assoc. Prof./Chief Editor-GCTLC

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. This pre-lesson introduces the BLAST tool.

    https://qubeshub.org/publications/2755/?v=1

13. Pre-lesson: Introduction to BLAST

    22 Sep 2021 | Teaching Materials | Contributor(s):

    By Sarah Prescott

    BioQUEST - Executive Director / UNH - Assoc. Prof./Chief Editor-GCTLC

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. This pre-lesson introduces the BLAST tool.

    https://qubeshub.org/publications/2754/?v=1

14. Applying phylogenetic tree building in MEGA X to forensic applications for identifying unknown specimens

    30 Aug 2021 | Teaching Materials | Contributor(s):

    By Nicholas Lorusso¹, Denise Gemmellaro²

    1. University of North Texas at Dallas 2. Kean University

    This exercise is designed to guide a learner through the construction of phylogenetic trees as a means of addressing research questions in forensic science such as the identification of previously...

    https://qubeshub.org/publications/2567/?v=1

15. Pre-lesson: Introduction to BLAST

    05 Aug 2020 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. This pre-lesson introduces the BLAST tool.

    https://qubeshub.org/publications/1085/?v=2

16. Lesson III - Annotation

    05 Aug 2020 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...

    https://qubeshub.org/publications/856/?v=3

17. Genome Sequence Data in R using Biostrings (Swirl Lesson)

    09 Jun 2020 | Teaching Materials | Contributor(s):

    By Robert E Furrow

    University of California, Davis

    By the end of this lesson, students should be able to load FASTA files into R as DNAStringSets and use width() and alphabetFrequency(), combined with other functions like sum() and mean(), to...

    https://qubeshub.org/publications/1898/?v=1

18. Exploring the evolution of caffeine biosynthesis enzymes

    22 Jan 2020 | Teaching Materials | Contributor(s):

    By Shuchismita Dutta

    RCSB Protein Data Bank, Rutgers University

    Caffeine is a very common stimulant consume worldwide as tea, coffee, mate, cocoa, and chocolate. Ever wondered why plants make caffeine? Do all caffeine producing plants have the same enzymes for...

    https://qubeshub.org/publications/1723/?v=1

19. BLAST Exercises for Analyzing Cloning Results

    09 Jan 2020 | Teaching Materials | Contributor(s):

    By Erin R. Morris

    Baker University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. These activities have modified Lesson 1: Introduction to Genome...

    https://qubeshub.org/publications/1734/?v=1

20. Databases: A Study of Influenza

    09 Jan 2020 | Teaching Materials | Contributor(s):

    By Selene Nikaido

    University of Central Missouri

    This lesson introduces the student to the Influenza Research Database. Students will select Influenza genome sequences to see how they are related. Students tests hypotheses about evolutionary...

    https://qubeshub.org/publications/1642/?v=1