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RNAseq data analysis using Galaxy
02 Jul 2021 | Teaching Materials | Contributor(s):
By Matthew Escobar1, Sam S Donovan2, Irina Makarevitch3, Bill Morgan4, Sabrina Robertson5
1. California State University San Marcos 2. University of Pittsburgh 3. Hamline University 4. The College of Wooster 5. North Carolina State University
This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.
https://qubeshub.org/publications/118/?v=4
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Using Synthetic Biology to Teach Data Science
26 Jun 2019 | Teaching Materials | Contributor(s):
By Margaret S Saha1, Beteel Abu-Ageel1, Sanjana Challa1, Xiangyi Fang1, Chai Hibbert1, Anna Isler1, Elias Nafziger1, Adam Oliver1, Hanqiu Peng1, Julia Urban1, Vivian Zhu1
College of William and Mary
Abstract for poster on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.
https://qubeshub.org/publications/1326/?v=1
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Using DNA Subway to Analyze Sequence Relationships
28 May 2018 | Teaching Materials | Contributor(s):
By Jason Williams1, Ray A. Enke2, Oliver Hyman2, Emily Lescak3, Sam S Donovan4, William Tapprich5, Elizabeth F Ryder6
1. DNA Learning Center 2. The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University 3. University of Alaska 4. University of Pittsburgh 5. University of Nebraska-Omaha 6. Worcester Polytechnic Institute
This is a bioinformatics exercise using the DNA Subway Blue Line, a user-friendly pipeline of bioinformatics tools, to analyze a collection of mosquito DNA bar-code sequences.
https://qubeshub.org/publications/165/?v=2
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RNAseq data analysis using Galaxy
13 Nov 2017 | Teaching Materials | Contributor(s):
By Matthew Escobar1, Sam S Donovan2, Irina Makarevitch3, Bill Morgan4, Sabrina Robertson5
1. California State University San Marcos 2. University of Pittsburgh 3. Hamline University 4. The College of Wooster 5. North Carolina State University
This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.
https://qubeshub.org/publications/118/?v=3
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DNA Subway Learning Resources
18 Oct 2017 | Teaching Materials | Contributor(s):
By Jason Williams
DNA Learning Center
DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.
https://qubeshub.org/publications/164/?v=2
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Using DNA Subway to Analyze Sequence Relationships
18 Oct 2017 | Teaching Materials | Contributor(s):
By Jason Williams
DNA Learning Center
This is a bioinformatics exercise using DNA Subway
https://qubeshub.org/publications/165/?v=1
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RNAseq data analysis using Galaxy
01 Aug 2017 | Teaching Materials | Contributor(s):
By Matthew Escobar
California State University - San Marcos
This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.
https://qubeshub.org/publications/118/?v=2
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RNAseq data analysis using Galaxy
03 Jul 2017 | Teaching Materials | Contributor(s):
By Matthew Escobar
California State University - San Marcos
This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.
https://qubeshub.org/publications/118/?v=1
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Wolf Sheep Predation Simulation Exercise
05 Jun 2017 | Teaching Materials | Contributor(s):
By Liz Ryder
Worcester Polytechnic Institute
This resource is an exercise to introduce students to agent-based modeling of biological systems through working with a simple existing model.
https://qubeshub.org/publications/29/?v=2
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Exploring HIV Evolution
05 Jun 2017 | Teaching Materials | Contributor(s):
By Sam S Donovan1, Tony Weisstein2
1. University of Pittsburgh 2. Truman State University
In this activity you will study aspects of sequence evolution by working with a set of HIV sequence data from 15 different subjects (Markham, et al., 1998). You will first learn about the dataset,...
https://qubeshub.org/publications/24/?v=2
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Exploring HIV Evolution
05 Aug 2016 | Teaching Materials | Contributor(s):
By Sam S Donovan1, Tony Weisstein2
1. University of Pittsburgh 2. Truman State University
In this activity you will study aspects of sequence evolution by working with a set of HIV sequence data from 15 different subjects (Markham, et al., 1998). You will first learn about the dataset,...
https://qubeshub.org/publications/24/?v=1
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Wolf Sheep Predation Simulation Exercise
03 Aug 2016 | Teaching Materials | Contributor(s):
By Liz Ryder
Worcester Polytechnic Institute
This resource is an exercise to introduce students to agent-based modeling of biological systems through working with a simple existing model.
https://qubeshub.org/publications/29/?v=1