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1. Writing Clean Code in R Workshop

   09 Oct 2019 | Teaching Materials | Contributor(s):

   By Max Joseph¹, Leah Wasser

   Earth Lab - University of Colorado, Boulder

   When working with data, you often spend the most amount of time cleaning your data. Learn how to write more efficient code using the tidyverse in R.

   https://qubeshub.org/qubesresources/publications/1442/?v=1

2. Introduction to Version Control and Git Workshop

   09 Oct 2019 | Teaching Materials | Contributor(s):

   By Leah Wasser, Max Joseph

   Learn how to use version control with Git to work collaboratively and back up your work.

   https://qubeshub.org/qubesresources/publications/1443/?v=1

3. Get Started With GIS in Open Source Python Workshop

   09 Oct 2019 | Teaching Materials | Contributor(s):

   By Leah Wasser¹, Jenny Palomino¹, Joe McGlinchy¹

   Earth Lab - University of Colorado, Boulder

   There are a suite of powerful open source python libraries that can be used to work with spatial data. Learn how to use geopandas, rasterio and matplotlib to plot and manipulate spatial data in...

   https://qubeshub.org/qubesresources/publications/1441/?v=1

4. Population Demography in Swirl

   26 Sep 2019 | Teaching Materials | Contributor(s):

   By Emily Weigel

   Georgia Institute of Technology

   The students will learn to generate, test, and graphically represent basic hypotheses on data distributions using large datasets.

   https://qubeshub.org/qubesresources/publications/1214/?v=2

5. Yeast Cell Growth

   09 Sep 2019 | Teaching Materials | Contributor(s):

   By Claudia Neuhauser

   University of Houston

   Numbers Count resource using Excel for data analysis

   https://qubeshub.org/qubesresources/publications/755/?v=2

6. Ferns are Everywhere

   09 Sep 2019 | Teaching Materials | Contributor(s):

   By Claudia Neuhauser

   University of Houston

   Using spatial fern population data in hypothesis testing

   https://qubeshub.org/qubesresources/publications/753/?v=2

7. REMNet Tutorial, R Part 3: Creating Alpha Diversity Plots in R 5.2.19

   28 Aug 2019 | Teaching Materials | Contributor(s):

   By Jessica Joyner

   CUNY Brooklyn College

   Video on creating alpha diversity plots in R from the Research Experiences in Microbiomes Network

   https://qubeshub.org/qubesresources/publications/1312/?v=1

8. Using Synthetic Biology to Teach Data Science

   05 Aug 2019 | Teaching Materials | Contributor(s):

   By Margaret S Saha¹, Beteel Abu-Ageel¹, Sanjana Challa¹, Xiangyi Fang¹, Chai Hibbert¹, Anna Isler¹, Elias Nafziger¹, Adam Oliver¹, Hanqiu Peng¹, Julia Urban¹, Vivian Zhu¹

   College of William and Mary

   Poster and supplemental materials on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.

   https://qubeshub.org/qubesresources/publications/1326/?v=3

9. Using Synthetic Biology to Teach Data Science

   30 Jul 2019 | Teaching Materials | Contributor(s):

   By Margaret S Saha¹, Beteel Abu-Ageel¹, Sanjana Challa¹, Xiangyi Fang¹, Chai Hibbert¹, Anna Isler¹, Elias Nafziger¹, Adam Oliver¹, Hanqiu Peng¹, Julia Urban¹, Vivian Zhu¹

   College of William and Mary

   Poster and supplemental materials on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.

   https://qubeshub.org/qubesresources/publications/1326/?v=2

10. NMDS to Study Dead Wood Fungi Communities in Parks of New Jersey

    30 Jul 2019 | Teaching Materials | Contributor(s):

    By Maria Shumskaya¹, Christopher Zambell¹

    Kean University

    Students use dead wood (saproxylic) fungi occurrence data from New Jersey, USA collected by students and faculty of Kean University to learn the basics of community ecology. Simple NMDS ordination...

    https://qubeshub.org/qubesresources/publications/1367/?v=1

11. Aquatic Nutrient Levels and Climate Change

    16 Jul 2019 | Teaching Materials | Contributor(s):

    By Elli Bosch¹, Kaycee Faunce¹, Amanda Thompson

    Virginia Commonwealth University

    This learning module was designed to introduce students to the aquatic nutrients nitrogen and phosphorus, their roles in ecosystem function and nutrient pollution, and what impacts climate change...

    https://qubeshub.org/qubesresources/publications/1356/?v=1

12. Striped Bass: A Regulatory Success Story

    12 Jul 2019 | Teaching Materials | Contributor(s):

    By J. Alexander McCrickard¹, Angela Hanretty¹, Amanda Thompson¹

    Virginia Commonwealth University

    This module examines the Maryland striped bass moratorium (1985-1989) as a fisheries management success story. Maryland DNR striped bass young of the year data is utilized for least squares linear...

    https://qubeshub.org/qubesresources/publications/1347/?v=1

13. Using Synthetic Biology to Teach Data Science

    26 Jun 2019 | Teaching Materials | Contributor(s):

    By Margaret S Saha¹, Beteel Abu-Ageel¹, Sanjana Challa¹, Xiangyi Fang¹, Chai Hibbert¹, Anna Isler¹, Elias Nafziger¹, Adam Oliver¹, Hanqiu Peng¹, Julia Urban¹, Vivian Zhu¹

    College of William and Mary

    Abstract for poster on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.

    https://qubeshub.org/qubesresources/publications/1326/?v=1

14. Does Organelle Shape Matter? Exploring Cell Shape through the Allen Cell Explorer and High-content Microscopy Datasets

    12 Jun 2019 | Teaching Materials | Contributor(s):

    By Carlos Christopher Goller¹, Kaitlyn Casimo

    North Carolina State University

    The morphology and localization of structures inside the cell are often assumed to fit the ideal images found in biology textbooks. This interrupted case study using high-throughput microscopy data...

    https://qubeshub.org/qubesresources/publications/798/?v=1

15. Processes that Regulate Patterns of Species and Genetic Diversity - Intro Environmental Science

    01 Jun 2019 | Teaching Materials | Contributor(s):

    By Megan Kelly

    Arrupe College of Loyola University Chicago

    This activity was adapted for use in an intro non-majors Environmental Science course, with an emphasis on collaborative data collection.

    https://qubeshub.org/qubesresources/publications/1267/?v=1

16. The Effect of Climate Change on Butterfly Phenology - Intro Environmental Science

    01 Jun 2019 | Teaching Materials | Contributor(s):

    By Megan Kelly

    Arrupe College of Loyola University Chicago

    In this module, students practice interpreting the relationship between variables before exploring changes in butterfly phenology through the use of natural history collections data.

    https://qubeshub.org/qubesresources/publications/1266/?v=1

17. Modification of "The Effect of Climate Change on Butterfly Phenology" module by Linton et al.

    30 May 2019 | Teaching Materials | Contributor(s):

    By Kaitlin Stack Whitney

    Rochester Institute of Technology

    This is a modification of the Linton et al. module in TIEE Volume 13. Students use data from digitized museum records of butterfly specimens in a modification with no homework (lab/workshop format)...

    https://qubeshub.org/qubesresources/publications/1163/?v=1

18. Investigating human impacts on stream ecology: locally and nationally

    29 May 2019 | Teaching Materials | Contributor(s):

    By Jillian K. Decker

    State University of New York - Rockland Community College

    How does nutrient pollution impact stream ecosystems locally and nationally?

    https://qubeshub.org/qubesresources/publications/1249/?v=1

19. Processes that Regulate Patterns of Species and Genetic Diversity

    29 May 2019 | Teaching Materials | Contributor(s):

    By Jillian K. Decker

    State University of New York - Rockland Community College

    This activity was developed for an undergraduate upper level ecology course for Environmental or Biological Science majors. Classes of ~20 students work best for the activity.

    https://qubeshub.org/qubesresources/publications/1245/?v=1

20. Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach

    29 May 2019 | Teaching Materials | Contributor(s):

    By Ami Erickson

    This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein...

    https://qubeshub.org/qubesresources/publications/1247/?v=1