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Tags: NCBI

All Categories (1-14 of 14)

  1. Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach

    29 May 2019 | Teaching Materials | Contributor(s):

    By Ami Erickson

    This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein...

    https://qubeshub.org/qubesresources/publications/1247/?v=1

  2. Sequence Similarity Resource Adaptation: Exploring Ebola Virus

    16 May 2019 | Teaching Materials | Contributor(s):

    By William Tapprich

    University of Nebraska-Omaha

    This adaptation of the sequence similarity resource provides biology students with a basic set of bioinformatics concepts and tools. These concepts and tools are used to explore relationships...

    https://qubeshub.org/qubesresources/publications/1219/?v=1

  3. Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses

    02 May 2019 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Carlos Christopher Goller3, Sabrina Robertson3

    1. Adams State University 2. Fairmont State University 3. North Carolina State University

    This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/qubesresources/publications/56/?v=5

  4. Colon Cancer: A Case of Genetic Bad Luck

    03 Jan 2019 | Teaching Materials | Contributor(s):

    By Anne M. Casper

    Eastern Michigan University

    Case study developed for an introductory genetics class published in the National Center for Case Study Teaching in Science

    https://qubeshub.org/qubesresources/publications/992/?v=1

  5. Bioinformatics: An Interactive Introduction to NCBI

    03 Jan 2019 | Teaching Materials | Contributor(s):

    By Seth Bordenstein

    Marine Biological Laboratory

    Modules showing how the NCBI database classifies and organizes information on DNA sequences, evolutionary relationships, and scientific publications. And a module working to identify a nucleotide...

    https://qubeshub.org/qubesresources/publications/989/?v=1

  6. Bioinformatics - Investigating Sequence Similarity

    04 Dec 2018 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Carlos Christopher Goller3, Sabrina Robertson3

    1. Adams State University 2. Fairmont State University 3. North Carolina State University

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/qubesresources/publications/56/?v=4

  7. How to Use BLASTP NCBI

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    A walk through on how to find protein sequences and use BLASTP and PSI-BLAST in NCBI.

    https://qubeshub.org/qubesresources/publications/468/?v=1

  8. NCBI Overview

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    An overview of some of the databases within NCBI and how to get FASTA sequences.

    https://qubeshub.org/qubesresources/publications/464/?v=1

  9. RNAseq data analysis using Galaxy

    13 Nov 2017 | Teaching Materials | Contributor(s):

    By Matthew Escobar1, Sam S Donovan2, Irina Makarevitch3, Bill Morgan4, Sabrina Robertson5

    1. California State University San Marcos 2. University of Pittsburgh 3. Hamline University 4. The College of Wooster 5. North Carolina State University

    This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.

    https://qubeshub.org/qubesresources/publications/118/?v=3

  10. Bioinformatics - Investigating Sequence Similarity

    05 Jul 2017 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3, Carlos Christopher Goller4, Sabrina Robertson5

    1. Adams State University 2. Hampshire College 3. Alabama State University 4. North Carolina State University 5. NC State

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/qubesresources/publications/56/?v=3

  11. Bioinformatics - Investigating Sequence Similarity

    05 Jun 2017 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3

    1. Adams State University 2. Hampshire College 3. Alabama State University

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/qubesresources/publications/56/?v=2

  12. Bioinformatics - Investigating Sequence Similarity

    31 Jan 2017 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3

    1. Adams State University 2. Hampshire College 3. Alabama State University

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/qubesresources/publications/56/?v=1

  13. PPS

    07 May 2016 | Teaching Materials | Contributor(s):

    By Sam S Donovan

    University of Pittsburgh

    I guess this is required

    https://qubeshub.org/qubesresources/publications/10/?v=1

  14. A Laboratory Class Exploring Microbial Diversity and Evolution Using Online Databases, the Biology Workbench, and Phylogenetics Software

    29 Sep 2015 | | Contributor(s):: Sarah Boomer, Kelly Shipley, Bryan Dutton, Daniel Lodge

    Students assemble and align bacterial datasets using DNA information downloaded from the National Center for Biotechnology Information website and Biology Workbench.  Specifically, they compare unknown original DNA sequences (from, in our case, hot spring communities) to a backbone of...