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Tags: Undergraduate

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  1. 3D breast cancer tissue reconstruction

    24 Aug 2018 | Teaching Materials | Contributor(s):

    By Jeremy M Wojdak1, Kerri-Ann Norton2

    1. Radford University 2. Johns Hopkins University

    This module allows students to follow a researcher as she discovers new features of breast cancer tissue architecture, using 3D reconstructions of histological specimens.

    https://qubeshub.org/qubesresources/publications/543/?v=1

  2. 3D breast cancer tissue reconstruction

    17 Sep 2018 | Teaching Materials | Contributor(s):

    By Jeremy M Wojdak1, Kerri-Ann Norton2

    1. Radford University 2. Johns Hopkins University

    This module allows students to follow a researcher as she discovers new features of breast cancer tissue architecture, using 3D reconstructions of histological specimens.

    https://qubeshub.org/qubesresources/publications/543/?v=2

  3. 3D FractaL-Tree

    11 Sep 2018 | Teaching Materials | Contributor(s):

    By John R Jungck1, Jennifer Spangenberg2, Noppadon Khiripet3, Rawin Viruchpinta3, Jutarat Maneewattanapluk3

    1. Interdisciplinary Science Learning Center at the University of Delaware 2. Beloit College 3. National Electronics and Computer Technology Center

    3D FractaL-Tree allows scientists to collect data from actual specimens in the field or laboratory, insert these measurements into a spatially explicit L-system package, and then visually compare...

    https://qubeshub.org/qubesresources/publications/775/?v=1

  4. A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!

    28 Feb 2019 | Teaching Materials | Contributor(s):

    By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5

    1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University

    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    https://qubeshub.org/qubesresources/publications/1092/?v=1

  5. A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!

    07 Jun 2019 | Teaching Materials | Contributor(s):

    By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5

    1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University

    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    https://qubeshub.org/qubesresources/publications/1092/?v=2

  6. A Growing Concern: Sustaining Soil Resources through Local Decision Making

    11 Jan 2018 | Teaching Materials | Contributor(s):

    By Sarah Fortner1, Martha Murphy2, Hannah Scherer3

    1. Wittenberg University 2. Santa Rosa Junior College 3. Virginia Tech

    This module addresses this need by providing students the opportunity to examine the differences between intensively managed agricultural landscapes (e.g. grazelands, conventional tillage) and...

    https://qubeshub.org/qubesresources/publications/291/?v=1

  7. A Hands-on Introduction to Hidden Markov Models

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Tony Weisstein1, Elena Gracheva2, Zane Goodwin2, Zongtai Qi2, Wilson Leung2, Christopher D. Shaffer2, Sarah C.R. Elgin2

    1. Truman State University 2. Washington University in St. Louis

    A lesson in which students will understand the basic structure of an HMM, the types of data used in ab initio gene prediction, and its consequent limitations.

    https://qubeshub.org/qubesresources/publications/999/?v=1

  8. A Pipeline in Paradise

    03 Apr 2018 | Teaching Materials | Contributor(s):

    By Victoria Schneider

    I incorporated fracking into the case study instead of just focusing on building a pipeline, which allowed us to discuss fracking with this case study.

    https://qubeshub.org/qubesresources/publications/439/?v=1

  9. A Structured Inquiry Approach to Cotyledon Phenotyping

    20 Dec 2018 | Teaching Materials | Contributor(s):

    By Megan L Van Etten

    Pennsylvania State University

    In this lab, students will work with messy data to try to answer the question “How do plants inherit cotyledon color?”

    https://qubeshub.org/qubesresources/publications/968/?v=1

  10. A Walk Through the Woods

    09 Jan 2018 | Teaching Materials | Contributor(s):

    By Jerome Chave1, David Coomes2, Steven Jansen3, Simon Lewis4, Nathan Swenson5, Amy Zanne6, Gaby Lopez-Gonzales7, J Ilic, RB Miller8, MC Wiemann9, Samantha Swauger10

    1. The Academy of Europe 2. Cambridge University 3. Ulm University 4. University College London 5. University of Maryland 6. The George Washington University 7. University of Leeds 8. University of California, Berkeley 9. University of Florida 10. DryadLab

    Data driven curriculum module from Dryad Digital Repository

    https://qubeshub.org/qubesresources/publications/274/?v=1

  11. ABO Blood Group Frequencies

    11 Sep 2018 | Teaching Materials | Contributor(s):

    By John R Jungck1, Jennifer A. Spangenberg2

    1. Interdisciplinary Science Learning Center at the University of Delaware 2. Beloit College

    An Excel workbook in which students can calculate blood type frequencies through different approaches (Hardy-Weinberg, quadratic formula, and the EM algorithm). The workbook shows the formulas used...

    https://qubeshub.org/qubesresources/publications/756/?v=1

  12. Adaptation of Investigating human impacts on stream ecology: locally and nationally

    10 Jun 2019 | Teaching Materials | Contributor(s):

    By Catherine Sughrue Etter

    Cape Cod Community College

    TIEE Module- How does nutrient pollution impact stream ecosystems locally and nationally?

    https://qubeshub.org/qubesresources/publications/1294/?v=1

  13. Adaptation of Terrestrial Trophic Cascades & Population Structure to a Non-Major’s Ecology Course

    21 Dec 2018 | Teaching Materials | Contributor(s):

    By John Howard Starnes

    Somerset Community College

    In this activity, students will use data from natural parks to examine trophic cascades.

    https://qubeshub.org/qubesresources/publications/975/?v=1

  14. Adapted Value of Mistakes

    10 May 2019 | Teaching Materials | Contributor(s):

    By Sheela Vemu

    Waubonsee Community College - Tenure Track

    This module is adapted from BIOMAAP materials on the value of mistakes and application of growth mindset in a microbiology lab.

    https://qubeshub.org/qubesresources/publications/1199/?v=1

  15. Adapting InTeGrate Materials for Online Courses

    22 Aug 2018 | Teaching Materials | Contributor(s):

    By Tara Holmberg

    Northwestern Connecticut Community College

    As part of my second mentoring of the InTeGrate FMN for QUBES, I chose to focus on my conversion of several resources to an online course format.

    https://qubeshub.org/qubesresources/publications/745/?v=1

  16. Additional Figures of the Day - Parasitology

    30 May 2019 | Teaching Materials | Contributor(s):

    By Elizabeth Hamman

    Radford University

    These additional figures were used in a Parasitology course (juniors and seniors) at Radford University.

    https://qubeshub.org/qubesresources/publications/1251/?v=1

  17. Agent-Based Modeling Course Materials

    29 Jan 2019 | Teaching Materials | Contributor(s):

    By Erin N. Bodine

    Rhodes College

    Materials created for an upper level ABM course. Prerequisite: Students have taken either (a) another modeling course, or (b) the introductory computer science sequence.

    https://qubeshub.org/qubesresources/publications/1030/?v=1

  18. Aging and Circular RNAs

    13 Apr 2018 | Teaching Materials | Contributor(s):

    By Pedro Miura

    University of Nevada, Reno

    A science FIT seminar presented to incoming freshmen at UNR

    https://qubeshub.org/qubesresources/publications/480/?v=1

  19. AIM-UP! Coal balls lesson

    22 Jan 2018 | Teaching Materials | Contributor(s):

    By Monte Garroutte1, Jordan Metzgar1, Hirotsugu Mori1

    University of Alaska Museum of the North

    In this activity, students learn about ancient plant life and climate change by examining coal balls. In addition to the lesson itself, information is provided on where to purchase coal ball peel...

    https://qubeshub.org/qubesresources/publications/334/?v=1

  20. AIM-UP! GIS and bats lesson

    22 Jan 2018 | Teaching Materials

    This lesson introduces the use of GIS (geographic information systems) in the study of biological questions, using bats as the model organism. This activity requires access to GIS software.

    https://qubeshub.org/qubesresources/publications/335/?v=1

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