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  1. Digital Atlas of Ancient Life | Exploring the Diversity and History of Fossil Life

    08 Jun 2020 | Teaching Materials | Contributor(s):

    By Jonathan Hendricks

    Paleontological Research Institution

    The Digital Atlas project include field guides to fossils (including a mobile app), an online paleontology textbook, and a collection of over 500 virtual 3D models of fossil specimens.

    https://qubeshub.org/publications/1893/?v=1

  2. Coding Club: A Positive Peer-Learning Community

    22 Apr 2020 | Teaching Materials | Contributor(s):

    By Gergana Daskalova1, Sandra Angers-Blondin1, John Godlee1, Izzy Rich1, Beverly Tan1, Declan Valters1, Haydn Thomas1, Pedro Miranda1, Gabriela Hajduk1, Kat Keogan1, Isla Myers-Smith1, Kyle Dexter1, Christina Coakley1

    University of Edinburgh

    Free and self-paced tutorials and courses for learning to code out of the University of Edinburgh

    https://qubeshub.org/publications/1816/?v=1

  3. Biodiversity research using digitized, internet-based natural history collections

    17 Dec 2019 | Teaching Materials | Contributor(s):

    By Kaitlin Stack Whitney

    Rochester Institute of Technology

    Collections based research is a critical tool for organismal biology and biodiversity research. Yet natural history collections have a complicated past. This multi-class module examines the...

    https://qubeshub.org/publications/1553/?v=1

  4. Using Synthetic Biology to Teach Data Science

    30 Jul 2019 | Teaching Materials | Contributor(s):

    By Margaret S Saha1, Beteel Abu-Ageel1, Sanjana Challa1, Xiangyi Fang1, Chai Hibbert1, Anna Isler1, Elias Nafziger1, Adam Oliver1, Hanqiu Peng1, Julia Urban1, Vivian Zhu1

    College of William and Mary

    Poster and supplemental materials on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.

    https://qubeshub.org/publications/1326/?v=2

  5. Quantifying The Drivers and Impacts of Natural Disturbance Events – The 2013 Colorado Floods

    12 Jul 2019 | Teaching Materials | Contributor(s):

    By Heather Susanne Zimbler-DeLorenzo

    Alfred University

    This lesson focuses on ways that scientists identify and use data to understand ecological disturbance events using data from five public datasets. The main lesson focused on interpretation of...

    https://qubeshub.org/publications/1349/?v=1

  6. Using Synthetic Biology to Teach Data Science

    26 Jun 2019 | Teaching Materials | Contributor(s):

    By Margaret S Saha1, Beteel Abu-Ageel1, Sanjana Challa1, Xiangyi Fang1, Chai Hibbert1, Anna Isler1, Elias Nafziger1, Adam Oliver1, Hanqiu Peng1, Julia Urban1, Vivian Zhu1

    College of William and Mary

    Abstract for poster on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.

    https://qubeshub.org/publications/1326/?v=1

  7. BioQUEST / QUBES Summer Workshop 2019 - Code of Conduct

    23 Nov 2018 | Teaching Materials | Contributor(s):

    By Kristin Jenkins1, Hayley Orndorf2

    1. BioQUEST 2. University of Pittsburgh

    We are using this project to publish and version our meeting code of conduct. Our goal is to engage the conference community in the discussion of the code of conduct to raise awareness about it.

    https://qubeshub.org/publications/936/?v=1

  8. Questions For Biology: Concept Inventories for Biological Concepts

    30 Oct 2018 | Teaching Materials | Contributor(s):

    By Gülnur Birol1, Greg Bole1, Sunita Chowrira1, Bridgette Clarkston1, Thomas Deane1, Malin Hansen1, Erica Jeffery1, Pam Kalas1, Kathy Nomme1, Rosemary Oh-McGinnis1, Angie O’Neill1, Carol Pollock1, Joan Sharp1, Karen Smith1, Michelle Tseng1

    University of British Columbia

    The Questions For Biology (Q4B) team aims to create validated concept inventories for use in diagnosing student misconceptions, informing teaching practices and tracking learning gains across a...

    https://qubeshub.org/publications/908/?v=1

  9. Computational Biology using R

    30 Oct 2018 | Teaching Materials | Contributor(s):

    By Hong Qin

    University of Tennessee Chattanooga

    This is an introductory level course on computational biology.

    https://qubeshub.org/publications/907/?v=1

  10. ModelSim Population Biology Unit

    30 Oct 2018 | Teaching Materials | Contributor(s):

    By Uri Wilensky1, Paulo Blikstein2, Corey Brady3, David Figlio1, Pratim Sengupta4, Jason Bertsche1, Yu (Bryan) Guo1, Nathan Holbert1, Michael Novak1, Firat Soylu1, Aditi Wagh1, Gokul Krishnan4, Brogan Miller2, Shima Salehi2

    1. Northwestern University 2. Stanford University 3. Inquire Learning 4. Vanderbilt University

    This resource provides rich student modeling activities and materials, teacher resources, and much more, in the realm of agent based models applied to population biology.

    https://qubeshub.org/publications/902/?v=1

  11. Statistics for Biologists

    30 Oct 2018 | Teaching Materials | Contributor(s):

    By Magdalena Skipper1, Ritu Dhand1, Helen Pearson1, Francesca Cesari1

    Nature

    There is no disputing the importance of statistical analysis in biological research, but too often it is considered only after an experiment is completed, when it may be too late.

    https://qubeshub.org/publications/897/?v=1

  12. Tools: New tools for new science

    30 Oct 2018 | Teaching Materials | Contributor(s):

    By Harry Shum

    Microsoft

    A collection of computational, modeling and data analysis tools developed at Microsoft Research Labs.

    https://qubeshub.org/publications/891/?v=1

  13. Molecular Biology of the Cell (MBoC)

    23 Oct 2018 | Teaching Materials

    An online journal focusing upon generally-applicable studies of cell biology.

    https://qubeshub.org/publications/851/?v=1

  14. Data Analysis for the Life Sciences

    23 Oct 2018 | Teaching Materials | Contributor(s):

    By Rafael A Irizarry1, Michael I Love1

    Harvard University

    An online stats book written completely in R

    https://qubeshub.org/publications/841/?v=1

  15. BioNumbers-the database of key numbers in molecular and cell biology

    19 Oct 2018 | Teaching Materials | Contributor(s):

    By Ron Milo1, Paul Jorgensen2, Michael Springer3

    1. Weizmann Institute of Science 2. Harvard Medical School 3. Beth Israel Deaconess Medical Center

    BioNumbers is a database of key numbers in molecular and cell biology—the quantitative properties of biological systems of interest to computational, systems and molecular cell biologists

    https://qubeshub.org/publications/821/?v=1

  16. BioNumbers: The Database of Useful Biological Numbers

    17 Oct 2018 | Teaching Materials | Contributor(s):

    By Ron Milo1, Paul Jorgensen2, Michael Springer2

    1. Weizmann Institute of Science 2. Harvard Medical School

    A database of biological numbers that you can search and browse.

    https://qubeshub.org/publications/813/?v=1

  17. statsTeachR

    11 Sep 2018 | Teaching Materials | Contributor(s):

    By Nicholas G. Reich1, Andrea S. Foulkes1, Harrel Blatt1, Eric A. Cohen1, Gregory Matthews1

    University of Massachusetts

    statsTeachR is an open-access, online repository of modular lesson plans, a.k.a. "modules", for teaching statistics using R at the undergraduate and graduate level.

    https://qubeshub.org/publications/781/?v=1

  18. Cookbook for R

    11 Sep 2018 | Teaching Materials | Contributor(s):

    By Winston Chang

    The goal of the cookbook is to provide solutions to common tasks and problems in analyzing data.

    https://qubeshub.org/publications/780/?v=1

  19. Assessment of Science Inquiry

    17 Jan 2018 | Teaching Materials | Contributor(s):

    By Sabra Lee, George Hein

    Resource from the 2015 BioQUEST Summer Workshop

    https://qubeshub.org/publications/313/?v=1

  20. QUBES: Supporting faculty in the teaching of mathematical biology

    22 Dec 2017 | Teaching Materials | Contributor(s):

    By Carrie Diaz Eaton1, Sam S Donovan2, Tom Gower3, Kristin Jenkins4, Drew LaMar5, DorothyBelle Poli6, Bob Sheehy7, Jeremy M Wojdak7

    1. Unity College 2. University of Pittsburgh 3. North Carolina State University 4. BioQUEST 5. College of William and Mary 6. Roanoke College 7. Radford University

    Abstract for a presentation that was part of a minisymposium at SMB 2015.

    https://qubeshub.org/publications/218/?v=1