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ISATools

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The open source ISA metadata tracking tools help to manage an increasingly diverse set of life science, environmental and biomedical experiments that employing one or a combination of technologies.

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Drew LaMar onto HubBub 2015
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Mandrill by MailChimp

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EMAIL DELIVERY API FROM MAILCHIMP

Use with Newsletter in the Hub

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WeKan: The open-source Trello-like kanban.

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Galaxy by CeSGO statistics

Welcome to CeSGO : The e-Science centre of Western France.

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minutes.io

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Minute your meetings. The easy way.

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Lively Kernel

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Lively is a new approach to Web programming available as open source under the MIT license. It provides a complete platform for Web applications, including dynamic graphics, network access, and development tools. Students, academics, and adventurous developers are invited to join the communitiy.

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e-biogenouest

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Galaxy is an open, web-based platform for data intensive biomedical research.

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  1. biomedical
  2. data analysis
  3. web application

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PanTHERIA for Mammal Life History Data

PanTHERIA is a global species-level data set of key life-history, ecological and geographical traits of all known extant and recently extinct mammals compiled from the literature. It also includes spatial databases of mammalian geographic ranges and global climatic and anthropogenic variables.

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Kristine Grayson onto Additional resources for teaching "Staying Alive"
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Sam Donovan's session on using Survivorship data

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This is a recording of a session led by Sam Donovan, in which he shares the additional materials he uses with his classes to teach the DryadLab Survivorship unit.  To find the materials he talks about, see the other posts  in this collection: "Diversity of ageing across the tree of life" has the additional paper he uses and  "A Survivorship Recitation Activity" has the materials for students.  

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Arietta Fleming-Davies onto Additional resources for teaching "Survivorship in the Natural World"
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Swirl: Learn R, in R

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swirl teaches you R programming and data science interactively, at your own pace, and right in the R console!

For teachers:

swirl is a platform for teaching R programming and data science. However, an educational platform is only as good as the content it delivers to students. Although we have contributed some content ourselves, swirl is designed in such a way that you can create your own interactive content and share it freely with students in your classroom or around the world.
  1. R
  2. teaching

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Learn to use R: Your hands-on guide

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by Sharon Machlis
edited by Johanna Ambrosio

Computerworld

  1. guide
  2. introduction
  3. R
  4. Tutorial

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Essentials of Conservation Biology

Essentials of Conservation Biology

Chapter 8 of this book is entitled "Vulnerability to Extinction". It identifies several characteristics of extinction-prone species. I think this could make a good assigned reading for students to prep them before coming into class.

  1. assigned reading
  2. textbook

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Trade-offs between vessel size and cavitation (embolism) potential

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Primary Literature - Xylem Evolution

Sperry, J.S. 2003. Evolution of Water Transport and Xylem Structure. International Journal of Plant Science 164(3 Suppl.):S115-S127.

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Primary Literature - survivorship and endangered species

  1. endangered species
  2. matrix model
  3. survivorship

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RExRepos: R Examples Repository

R code examples for a number of common data analysis tasks

  1. data analysis
  2. examples
  3. R
  4. statistics

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A shiny app for the walk in the woods project

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https://qubeshub.org/tools/rstudio/invoke?params=file:/data/groups/dryadlabclass/launchShinyWoodApp.R

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R Markdown Reference Guide

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Download

  1. R
  2. reference card
  3. Reference sheet
  4. R Markdown

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R Markdown Cheat Sheet

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Download

  1. R
  2. R Markdown

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Getting Started with R Markdown, knitr, and Rstudio 0.96

This post examines the features of R Markdown using knitr in Rstudio 0.96. This combination of tools provides an exciting improvement in usability for reproducible analysis.

  1. R
  2. R Markdown

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Wikipedia category: Probability (apparent) paradoxes

List of some really interesting mind-benders in probability.

  1. paradoxes
  2. Probability

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PPLANE

PPLANE is a tool for Phase Plane Analysis of a System of Differential Equations of the form: x’ = dx/dt = f(x,y), y’ = dy/dt = g(x,y).

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Resources: Software

{xhub:include type=“stylesheet” filename=”/site/media/css/nocontentpaneopen.css”} {xhub:include type=“stylesheet” filename=”/templates/qubes/html/system/css/introduction.css”} {xhub:include type=“stylesheet” filename=”/site/media/css/searchandbrowse.css”} Resources: Software Submit a resource…

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Amazing Sheep Cyclone Caught On Camera - Must Watch

Anyone want to try their hand at modeling this behavior?

Thanks, Amy Hurford!

  1. agent-based modeling
  2. emergent behavior
  3. flocking

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