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    Understanding Action Potential and Frequency Coding using Scientist Spotlight and Data Nuggets
    The main crux of this activity is to integrate three existing frameworks including ideas of the Scientist Spotlight Initiative, build and solidify the quantitative reasoning skills in our students...
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    Lesson II - Databases
    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson II introduces the principal databases for microbial...

    Keywords: Bioinformatics EducationBioinformatics and Genomics

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    BLAST Exercises for Analyzing Cloning Results
    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. These activities have modified Lesson 1: Introduction to Genome...

    Keywords: Bioinformatics EducationBioinformatics and Genomics

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    Lesson V - Phylogenetics
    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson V is an introduction to Phylogenetics.

    Keywords: Bioinformatics EducationBioinformatics and Genomics

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    Lesson IV - Comparative Genomics
    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson IV, Comparative Genomics, discusses some of the tools...

    Keywords: Bioinformatics EducationBioinformatics and Genomics

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    Remote sensing data processing – NEON airborne data
    Concepts of remote sensing and data logistics, and NEON remote sensing data are introduced. Students learn how to apply spatial data processing and visualization skills using R coding program to...

    Keywords: RlandscapebiomassProblem Solvingraster raster data processingspatial data visualizationvegetation indicescanopy

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    Calling Bullshit DCS 105 Bates College RByte Worksheets
    These are handout worksheets for your in-class RByte activities.

    Keywords: RActivityGoogle CoLabCalling BullshitRByteData PracticeCoding SkillsSkill development

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    Genome Solver: Complete Set of Lessons
    The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating...

    Keywords: bioinformaticsNIBLSEBioinformatics EducationBioinformatics and GenomicsC4. Bioinformatics toolsC5. Data retrievalC6. ModelsC8. Data typesC9. ImplicationsRecommended by NIBLSE

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    Calling Bullshit Bates College DCS 105 RByte Slides
    This slide deck is a mix of in-class participation and coding activities which aims to formalize understanding of code.

    Keywords: RIntroductorybatescolabDCS 105Calling Bullshit

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    Lesson III - Annotation
    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...

    Keywords: Bioinformatics EducationBioinformatics and Genomics

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    Lesson I - Introduction to Genome Solver
    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Part I is the Introduction to the Genome Solver Project.

    Keywords: Bioinformatics EducationBioinformatics and Genomics

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    Climate change and Strawberries: A real-life problem-based activity for teaching ANOVA
    This is a real-life lab activity for teaching ANOVA using Problem-Based Learning and formatted for one-day (JMP or R) or two-day (JMP) implementations.

    Keywords: climate changeProblem based learningANOVAplant sciencetwo-way ANOVA

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    Working with plant phenology data and fitting a nonlinear model using least squares in R
    A participatory live-coding lesson on working with NEON phenology data and fitting a sine-wave model to determine when different species get and lose their leaves.

    Keywords: modelingRphenologyNEONRstatscodeparticipatory live-coding

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    Digital Herbarium Lab with RStudio: Are shifting abundances of native species detectable over time?
    This 2- to 3-hour lab activity introduces sophomore-level students to digitized herbarium collections, R-coding, and potential reasons for shifting abundances in native and non-native plant species...

    Keywords: data analysistool:rstudionatural historyplant biologyinvasive plantsherbariumnative plantsdigitized natural history collectionsR code

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    Population Ecology in Swirl: Estimating Population Sizes
    The students will learn to estimate population sizes and consider assumptions of mathematical models and their applicability to the ecology of an organism/population

    Keywords: RSwirl

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    Interpreting one-factor ANOVA in R with swirl
    Interpreting One-Factor Analysis of Variance (ANOVA)

    Keywords: biostatisticsR programming languageSwirl

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    Island Biogeography
    The students will practice the basic code to test MacArthur and Wilson’s (1967) Island Biogeography model, focusing on how island size, distance, and perturbation affect species numbers.
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    Neochromosomes: Creating transcriptional units with yeast Golden Gate assembly
    This resource is a series of protocols using the yeast Golden Gate (yGG) method as developed by Neta Agmon and Leslie Mitchell in Jef Boeke’s lab to assemble a functional yeast gene with...
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    21st Century STEM Workforce Skills
    This activity includes a leadership assessment and associated exercise to encourage the development of 21st Century STEM Skills.

    Keywords: collaborationteam scienceleadership skills

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    Working with spreadsheet-style data in Python with pandas and seaborn
    This 4-hour participatory live-coding workshop takes learners through the basics of programming in Python via the Jupyter Lab interface and culminates with exploration and visualization of...

    Keywords: datapythonopenSpreadsheetbicylepandasseabornmatplotlib

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