All Categories (1-20 of 22)

1. BSL-4: Authorized Personnel Only

   15 Mar 2023 | Teaching Materials | Contributor(s):

   By Nicole Anthony

   Biological Sciences, Toronto District School Board

   National Center for Case Study Teaching in Science resource on the 2014 Ebola epidemic. This resource is also included in the NIBLSE Learning Resource Collection

   https://qubeshub.org/publications/795/?v=2

2. 

   Dana Parmenter

   https://qubeshub.org/community/members/24060

3. Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses

   28 Aug 2021 | Teaching Materials | Contributor(s):

   By Adam J. Kleinschmit*¹, Benita Brink¹, Steven Roof², Carlos Christopher Goller³, Sabrina Robertson³

   1. Adams State University 2. Fairmont State University 3. North Carolina State University

   Introductory bioinformatics exercises often walk students through the use of computational tools, but often provide little understanding of what a computational tool does "under the...

   https://qubeshub.org/publications/2622/?v=1

4. Inquiry-based hypothesis testing using phylogenetic trees in MEGA

   17 Jun 2021 | Teaching Materials | Contributor(s):

   By Kristin Hultgren

   Seattle University

   A key learning objective in biology is applying bioinformatics tools to test a real-life question. These inquiry-based modules have students assemble and align data, and construct simple...

   https://qubeshub.org/publications/2379/?v=1

5. Sequence Similarity: A Quick Introduction to Bioconductor

   04 Jun 2021 | Teaching Materials | Contributor(s):

   By Derek Edward Sollberger

   Princeton University

   Following the Sequence Similarity exercises by Kleinschmit, et al., this tutorial will guide students in using the Bioconductor suite of R packages to likewise compute sequence similarity.

   https://qubeshub.org/publications/2410/?v=1

6. Sequence Similarity: Introducing Biological Databases to Community College Biology Students

   01 Jun 2021 | Teaching Materials | Contributor(s):

   By Jennifer Katcher

   This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

   https://qubeshub.org/publications/2407/?v=1

7. Developing a phylogram from computational resources.

   01 Jun 2021 | Teaching Materials | Contributor(s):

   By Melanie Lenahan¹, Shea Cinquemani¹

   Raritan Valley Community College

   This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

   https://qubeshub.org/publications/2404/?v=1

8. Introductory Video and worksheets on Module 1 and 2 on "Sequence Similarity: An inquiry based and under the hood..."

   31 May 2021 | Teaching Materials | Contributor(s):

   By Alice Tarun

   St. Lawrence University

   The video walks the students to complete Module 1 and 2 on Sequence Similarly and Alignment adapted from Tapprich (2019) and Hudson Alpha that teaches these modules within the context of the...

   https://qubeshub.org/publications/2394/?v=1

9. BSL-4: Authorized Personnel Only

   17 Aug 2020 | Teaching Materials | Contributor(s):

   By Nicole Anthony

   Biological Sciences, Toronto District School Board

   National Center for Case Study Teaching in Science resource on the 2014 Ebola epidemic. This resource is also included in the NIBLSE Learning Resource Collection

   https://qubeshub.org/publications/795/?v=1

10. Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach

    29 May 2019 | Teaching Materials | Contributor(s):

    By Ami Erickson

    This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein...

    https://qubeshub.org/publications/1247/?v=1

11. Sequence Similarity Resource Adaptation: Exploring Ebola Virus

    16 May 2019 | Teaching Materials | Contributor(s):

    By William Tapprich

    University of Nebraska-Omaha

    This adaptation of the sequence similarity resource provides biology students with a basic set of bioinformatics concepts and tools. These concepts and tools are used to explore relationships...

    https://qubeshub.org/publications/1219/?v=1

12. Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses

    02 May 2019 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit¹, Benita Brink¹, Steven Roof², Carlos Christopher Goller³, Sabrina Robertson³

    1. Adams State University 2. Fairmont State University 3. North Carolina State University

    This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/publications/56/?v=5

13. Bioinformatics - Investigating Sequence Similarity

    04 Dec 2018 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit¹, Benita Brink¹, Steven Roof², Carlos Christopher Goller³, Sabrina Robertson³

    1. Adams State University 2. Fairmont State University 3. North Carolina State University

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/publications/56/?v=4

14. Using DNA Subway to Analyze Sequence Relationships

    28 May 2018 | Teaching Materials | Contributor(s):

    By Jason Williams¹, Ray A. Enke², Oliver Hyman², Emily Lescak³, Sam S Donovan⁴, William Tapprich⁵, Elizabeth F Ryder⁶

    1. DNA Learning Center 2. The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University 3. University of Alaska 4. University of Pittsburgh 5. University of Nebraska-Omaha 6. Worcester Polytechnic Institute

    This is a bioinformatics exercise using the DNA Subway Blue Line, a user-friendly pipeline of bioinformatics tools, to analyze a collection of mosquito DNA bar-code sequences.

    https://qubeshub.org/publications/165/?v=2

15. Intro to DNA Barcoding

    28 May 2018 | Teaching Materials | Contributor(s):

    By Oliver Hyman¹, Andrea Pesce², Elizabeth Doyle², Ray A Enke¹

    1. The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University 2. James Madison University

    This is a classroom tested introductory lesson & activity to introduce DNA Barcoding and DNA Subway Blue Line. It is for novices and will fit into a 30-45 min lecture or lab class period.

    https://qubeshub.org/publications/600/?v=1

16. Intro to DNA Subway Blue Line

    28 May 2018 | Teaching Materials | Contributor(s):

    By Oliver Hyman¹, Andrea Pesce², Elizabeth Doyle², Ray A Enke¹

    1. The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University 2. James Madison University

    This is a classroom tested introductory lesson & activity to introduce DNA Barcoding and DNA Subway Blue Line. It is for novices and will fit into a 1 hr 50 min lecture or lab class period.

    https://qubeshub.org/publications/599/?v=1

17. DNA Subway Learning Resources

    18 Oct 2017 | Teaching Materials | Contributor(s):

    By Jason Williams

    DNA Learning Center

    DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.

    https://qubeshub.org/publications/164/?v=2

18. Using DNA Subway to Analyze Sequence Relationships

    18 Oct 2017 | Teaching Materials | Contributor(s):

    By Jason Williams

    DNA Learning Center

    This is a bioinformatics exercise using DNA Subway

    https://qubeshub.org/publications/165/?v=1

19. DNA Subway Learning Resources

    16 Oct 2017 | Teaching Materials | Contributor(s):

    By Jason Williams

    Cold Spring Harbor Laboratory

    DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.

    https://qubeshub.org/publications/164/?v=1

20. Bioinformatics - Investigating Sequence Similarity

    05 Jul 2017 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit¹, Benita Brink¹, Steven Roof², Komal Vig³, Carlos Christopher Goller⁴, Sabrina Robertson⁵

    1. Adams State University 2. Hampshire College 3. Alabama State University 4. North Carolina State University 5. NC State

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/publications/56/?v=3