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Tags: NIBLSE

All Categories (1-20 of 21)

  1. Cystic Fibrosis Mechanism and Treatment

    01 Jul 2019 | Teaching Materials | Contributor(s):

    By HHMI BioInteractive

    This animation shows how mutations in an ion channel protein lead to the genetic disease cystic fibrosis. The animation also discusses how research on this protein has been used to develop...

    https://qubeshub.org/qubesresources/publications/1337/?v=1

  2. Biodiversity Literacy in Undergraduate Education (BLUE): Building standards and resources for using collections data in the classroom

    26 Jun 2019 | Teaching Materials | Contributor(s):

    By Molly Phillips1, Debra Linton2, Libby Ellwood3, Natalie Douglas2, Lisa White4, Anna Monfils2

    1. iDigBio, Florida Museum of Natural History, University of Florida 2. Central Michigan University 3. La Brea Tar Pits and Museum, Natural History Museum of Los Angeles County 4. University of California Museum of Paleontology, UC Berkeley

    Abstract for poster on using collections data presented at the 2019 BioQUEST & QUBES Summer Workshop

    https://qubeshub.org/qubesresources/publications/1324/?v=1

  3. Sequence Similarity in Developmental Biology - A Bioinformatics Exercise Using Myostatin

    19 Jun 2019 | Teaching Materials | Contributor(s):

    By Barbara Murdoch

    Eastern Connecticut State University

    This exercise leads upper level biology majors in an inquiry-based excursion to determine how similar the signaling molecule, myostatin, is between humans and mice, using a basic set of...

    https://qubeshub.org/qubesresources/publications/1317/?v=1

  4. Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE): Recent Activities

    11 Jun 2019 | Teaching Materials | Contributor(s):

    By William Morgan

    The College of Wooster

    Presentation on NIBLSE at the 2019 Great Lakes Bioinformatics Conference

    https://qubeshub.org/qubesresources/publications/1210/?v=1

  5. Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach

    29 May 2019 | Teaching Materials | Contributor(s):

    By Ami Erickson

    This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein...

    https://qubeshub.org/qubesresources/publications/1247/?v=1

  6. Sequence Similarity Resource Adaptation: Exploring Ebola Virus

    16 May 2019 | Teaching Materials | Contributor(s):

    By William Tapprich

    University of Nebraska-Omaha

    This adaptation of the sequence similarity resource provides biology students with a basic set of bioinformatics concepts and tools. These concepts and tools are used to explore relationships...

    https://qubeshub.org/qubesresources/publications/1219/?v=1

  7. A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!

    28 Feb 2019 | Teaching Materials | Contributor(s):

    By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5

    1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University

    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    https://qubeshub.org/qubesresources/publications/1092/?v=1

  8. Estimating Tree Heights: Right Triangle Trigonometry

    15 Feb 2019 | Teaching Materials | Contributor(s):

    By Lou Gross1, Monica Beals1, Susan Harrell1

    University of Tennessee Knoxville

    This module introduces basic trigonometry calculations in the context of understanding tree height calculations. It is intended for an introductory biology audience.

    https://qubeshub.org/qubesresources/publications/1060/?v=1

  9. Introduction to UNIX command line

    31 Jul 2018 | Teaching Materials | Contributor(s):

    By Serghei Mangul

    University of California - Los Angeles

    These are materials for a Unix workshop with hands-on examples that requires no prior knowledge of Unix or programming.

    https://qubeshub.org/qubesresources/publications/731/?v=1

  10. Links to Avida-ED spreadsheets for Active LENS and BioQUEST 2018

    22 Jun 2018 | Teaching Materials | Contributor(s):

    By Jim Smith

    Michigan State University

    Avida-ED materials and resources for Active LENS and BioQUEST 2018.

    https://qubeshub.org/qubesresources/publications/677/?v=1

  11. NIBLSE Core Competencies

    Collections | 19 Jun 2018 | Posted by Sam S Donovan

    https://qubeshub.org/community/groups/summer2018/collections/data-science-resources

  12. NIBLSE Core Competencies

    Collections | 13 Jun 2018 | Posted by Carlos Christopher Goller

    https://qubeshub.org/community/groups/hits/collections/hits-2018-workshop-resources

  13. Incubators: A community based model for improving the usability of bioinformatics learning resources

    19 Jan 2018 | Teaching Materials | Contributor(s):

    By Hayley Orndorf1, Bill Morgan2, Neal Grandgenett3, Mark A. Pauley3, Elizabeth Ryder4, Michael Sierk5, Robin Wright6, Anne Rosenwald7, Liz Dinsdale8, Eric Triplett9, Sam S Donovan1

    1. University of Pittsburgh 2. The College of Wooster 3. University of Nebraska at Omaha 4. Worcester Polytechnic Institute 5. Saint Vincent College 6. University of Minnesota 7. Georgetown University 8. San Diego State University 9. University of Florida

    Poster on Incubators, a NIBLSE and QUBES collaboration presented at Great Lakes Bioinformatics Conference - Chicago, IL

    https://qubeshub.org/qubesresources/publications/326/?v=1

  14. Using DNA Subway to Analyze Sequence Relationships

    18 Oct 2017 | Teaching Materials | Contributor(s):

    By Jason Williams

    DNA Learning Center

    This is a bioinformatics exercise using DNA Subway

    https://qubeshub.org/qubesresources/publications/165/?v=1

  15. Bioinformatics: CpG Islands

    17 Oct 2017 | Teaching Materials | Contributor(s):

    By Edward Himelblau

    California Polytechnic State University

    This is an introductory bioinformatics exercise intended for use in a genetics course.

    https://qubeshub.org/qubesresources/publications/147/?v=1

  16. DNA Subway Learning Resources

    16 Oct 2017 | Teaching Materials | Contributor(s):

    By Jason Williams

    Cold Spring Harbor Laboratory

    DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.

    https://qubeshub.org/qubesresources/publications/164/?v=1

  17. Bioinformatics - Investigating Sequence Similarity

    31 Jan 2017 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3

    1. Adams State University 2. Hampshire College 3. Alabama State University

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/qubesresources/publications/56/?v=1

  18. Incubators: A community based model for improving the usability of bioinformatics learning resources

    07 Nov 2016 | | Contributor(s):: Hayley Orndorf, Bill Morgan, Neal Grandgenett, Mark Pauley, Liz Ryder, Michael Sierk, Robin Wright, Anne Rosenwald, Liz Dinsdale, Eric Triplett, Sam S Donovan

    This resource has been updated - find the current version here: https://qubeshub.org/publications/326There are a variety of barriers to faculty participation in scholarly approaches to teaching. Primary among these are the challenges undergraduate faculty face in finding and...

  19. EREN PFPP Species Composition Curriculum Module with Data

    28 Sep 2016 | Teaching Materials | Contributor(s):

    By Jerald Dosch1, Erin Lindquist2, Karen Kuers3, Charles McClaugherty4, Kristine Hopfensperger5, Fernando Nieto6, Rachel Collins7, Tim Menzel8

    1. Macalester College 2. Meredith College 3. The University of the South 4. University of Mount Union 5. Northern Kentucky University 6. SUNY Old Westbury 7. Roanoke College 8. Piedmont College

    In this lab, students will learn foundational concepts of forest community dynamics and apply quantitative skills to data analysis and interpretation activities. Students will use tree plot data...

    https://qubeshub.org/qubesresources/publications/31/?v=1

  20. Needleman - Wunsch Algorithm Exercise

    03 Aug 2016 | Teaching Materials | Contributor(s):

    By Michael Sierk

    Saint Vincent College

    This exercise is used in a sophomore-junior level bioinformatics course. The algorithm is introduced to the students who then complete the exercise.

    https://qubeshub.org/qubesresources/publications/28/?v=1