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RNAseq data analysis using Galaxy
02 Jul 2021 | Teaching Materials | Contributor(s):
By Matthew Escobar1, Sam S Donovan2, Irina Makarevitch3, Bill Morgan4, Sabrina Robertson5
1. California State University San Marcos 2. University of Pittsburgh 3. Hamline University 4. The College of Wooster 5. North Carolina State University
This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.
Sequence Similarity: A Quick Introduction to Bioconductor
04 Jun 2021 | Teaching Materials | Contributor(s):
By Derek Edward Sollberger
UC Merced School of Natural Sciences
Following the Sequence Similarity exercises by Kleinschmit, et al., this tutorial will guide students in using the Bioconductor suite of R packages to likewise compute sequence similarity.
An Introduction to the R Programming Environment
02 Jun 2021 | Teaching Materials | Contributor(s):
By K. A. Garrett1, P. D. Esker1, A. H. Sparks1
Kansas State University
An online module introducing students and biologists to R, published in American Phytopathological Society
Sequence Similarity: Introducing Biological Databases to Community College Biology Students
01 Jun 2021 | Teaching Materials | Contributor(s):
By Jennifer Katcher
This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.
Developing a phylogram from computational resources.
By Melanie Lenahan1, Shea Cinquemani1
Raritan Valley Community College
Introductory Video and worksheets on Module 1 and 2 on "Sequence Similarity: An inquiry based and under the hood..."
31 May 2021 | Teaching Materials | Contributor(s):
By Alice Tarun
St. Lawrence University
The video walks the students to complete Module 1 and 2 on Sequence Similarly and Alignment adapted from Tapprich (2019) and Hudson Alpha that teaches these modules within the context of the...
The Ames Test
08 Jan 2021 | Teaching Materials | Contributor(s):
By Nathan Goodson-Gregg, Elizabeth A. De Stasio
Introduction to the Ames Test, published as GSA Learning Resource
Yeti or not: Do they exist?
31 Dec 2020 | Teaching Materials | Contributor(s):
By Keith Johnson1, Adam Kleinschmit2, Jill Rulfs3, William (Bill) Morgan4
1. Bradley University College of Liberal Arts and Sciences 2. University of Dubuque 3. Worcester Polytechnic Institute 4. The College of Wooster
Through this 4-part bioinformatics case study, students will be led through the forensic analysis of putative Yeti artifacts based on published findings.
NIBLSE Collaborative Community Model for developing, disseminating, and assessing bioinformatics learning resources
08 Dec 2020 | Teaching Materials | Contributor(s):
By William (Bill) Morgan1, Adam Kleinschmit2, Anne Rosenwald3, Eric Triplett4, Mark A. Pauley5, William Tapprich6
1. The College of Wooster 2. University of Dubuque 3. Georgetown University 4. University of Florida 5. University of Nebraska at Omaha 6. University of Nebraska-Omaha
The Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE) has cultivated a collaborative community model to facilitate the development, dissemination, and assessment of...
A Critical Guide to the UniProtKB Flat-file Format
05 Dec 2020 | Teaching Materials | Contributor(s):
By Teresa Attwood1, GOBLET Foundation
The University of Manchester, Manchester, UK
This Critical Guide briefly presents the need for biological databases and for a standard format for storing and organising biological data.
A Critical Guide to the PDB
This Critical Guide in the Introduction to Bioinformatics series provides a brief outline of the Protein Data Bank – the PDB – the world’s primary repository of biological macromolecular structures.
A Critical Guide to BLAST
04 Dec 2020 | Teaching Materials | Contributor(s):
This Critical Guide in the Introduction to Bioinformatics series provides an overview of the BLAST similarity search tool, briefly examining the underlying algorithm and its rise to popularity.
A Critical Guide to Unix
By Teresa Attwood1, GOBLET Foundation2
1. The University of Manchester, Manchester, UK 2. Global Organisation for Bioinformatics Learning, Education & Training
This Critical Guide in the Introduction to Bioinformatics series briefly introduces the Unix Operating System, and provides a subset of some of the most helpful and commonly used commands....
Bioinformatics: the Power of Computers in Biology – a Practical Guide
03 Dec 2020 | Teaching Materials | Contributor(s):
By Daniel Barker1, Heleen Plaisier2, Stevie Anne Bain1, Teresa Attwood
1. The University of Edinburgh, Edinburgh, UK 2. Royal Botanic Garden, Edinburgh, UK
This Practical Guide in the Bringing Bioinformatics into the Classroom series introduces simple bioinformatics approaches for database searching and sequence analysis.
BSL-4: Authorized Personnel Only
17 Aug 2020 | Teaching Materials | Contributor(s):
By Nicole Anthony
Biological Sciences, Toronto District School Board
National Center for Case Study Teaching in Science resource on the 2014 Ebola epidemic. This resource is also included in the NIBLSE Learning Resource Collection
Genomics Education Alliance: A Collection of Posters for the 2020 BIOME Institute.
23 Jul 2020 | Teaching Materials | Contributor(s):
By Vince Buonaccorsi1, Marcella Denise Cervantes2, Douglas L Chalker3, Anne Rosenwald4, Emily Wiley5, Jason Williams
1. Juniata College 2. Albion College 3. Washington University in St. Louis 4. Georgetown University 5. Claremont McKenna College
This is a collection of posters from members of the Genomics Education Alliance (GEA) that will be presented at the 2020 BIOME Institute.
Integration of Bioinformatics into Life Science Curricula: Community Development, Dissemination, and Assessment of a NIBLSE Learning Resource
By Adam Kleinschmit1, Rachel Cook2, Barbara Murdoch3, Elizabeth F Ryder4, William Tapprich5
1. University of Dubuque 2. Fairmont State University 3. Eastern Connecticut State University 4. Worcester Polytechnic Institute 5. University of Nebraska-Omaha
Big data and computational tools have transformed the way we address biological questions. To prepare undergraduates for tomorrow’s challenges, life science curricula should integrate the...
The Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE): Barriers to Integration
By Anne Rosenwald1, Elizabeth Dinsdale2, William Morgan3, Mark A. Pauley4, William Tapprich5, Eric Triplett6, Jason Williams7
1. Georgetown University 2. San Diego State University 3. The College of Wooster 4. University of Nebraska at Omaha 5. University of Nebraska-Omaha 6. University of Florida 7. Cold Spring Harbor Laboratory
The Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE) seeks to promote the use of bioinformatics and data science as a way to teach biology.
Incubators: Building community networks and developing open educational resources to integrate bioinformatics into life sciences education
By William Morgan1, Sam S Donovan2, Hayley Orndorf2, Sabrina Robertson3, Elizabeth F Ryder4, Michael Sierk5, Anne Rosenwald6, Elizabeth Dinsdale7, Eric Triplett8, Mark Pauley9, William Tapprich10
1. The College of Wooster 2. University of Pittsburgh 3. NC State 4. Worcester Polytechnic Institute 5. Saint Vincent College 6. Georgetown University 7. San Diego State University 8. University of Florida 9. National Science Foundation 10. University of Nebraska-Omaha
To efficiently and effectively integrate bioinformatics instruction into undergraduate life science curricula, educators would benefit from open access, high-quality learning resources (LRs) for...
14 May 2020 | Teaching Materials | Contributor(s):
By Keith Johnson
Bradley University College of Liberal Arts and Sciences
Through this 2-part bioinformatics case study, students will be led through the forensic analysis of putative Yeti artifacts based on published findings.