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Tags: NIBLSE

All Categories (1-20 of 68)

  1. BSL-4: Authorized Personnel Only

    17 Aug 2020 | Teaching Materials | Contributor(s):

    By Nicole Anthony

    Biological Sciences, Toronto District School Board

    National Center for Case Study Teaching in Science resource on the 2014 Ebola epidemic. This resource is also included in the NIBLSE Learning Resource Collection

    https://qubeshub.org/publications/795/?v=1

  2. Genomics Education Alliance: A Collection of Posters for the 2020 BIOME Institute.

    23 Jul 2020 | Teaching Materials | Contributor(s):

    By Vince Buonaccorsi1, Marcella Denise Cervantes2, Douglas L Chalker3, Anne Rosenwald4, Emily Wiley5, Jason Williams

    1. Juniata College 2. Albion College 3. Washington University in St. Louis 4. Georgetown University 5. Claremont McKenna College

    This is a collection of posters from members of the Genomics Education Alliance (GEA) that will be presented at the 2020 BIOME Institute.

    https://qubeshub.org/publications/1973/?v=1

  3. Integration of Bioinformatics into Life Science Curricula: Community Development, Dissemination, and Assessment of a NIBLSE Learning Resource

    23 Jul 2020 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Rachel Cook2, Barbara Murdoch3, Elizabeth F Ryder4, William Tapprich5

    1. University of Dubuque 2. Fairmont State University 3. Eastern Connecticut State University 4. Worcester Polytechnic Institute 5. University of Nebraska-Omaha

    Big data and computational tools have transformed the way we address biological questions. To prepare undergraduates for tomorrow’s challenges, life science curricula should integrate the...

    https://qubeshub.org/publications/1975/?v=1

  4. The Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE): Barriers to Integration

    23 Jul 2020 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Elizabeth Dinsdale2, William Morgan3, Mark A. Pauley4, William Tapprich5, Eric Triplett6, Jason Williams7

    1. Georgetown University 2. San Diego State University 3. The College of Wooster 4. University of Nebraska at Omaha 5. University of Nebraska-Omaha 6. University of Florida 7. Cold Spring Harbor Laboratory

    The Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE) seeks to promote the use of bioinformatics and data science as a way to teach biology.

    https://qubeshub.org/publications/1978/?v=1

  5. Incubators: Building community networks and developing open educational resources to integrate bioinformatics into life sciences education

    23 Jul 2020 | Teaching Materials | Contributor(s):

    By William Morgan1, Sam S Donovan2, Hayley Orndorf2, Sabrina Robertson3, Elizabeth F Ryder4, Michael Sierk5, Anne Rosenwald6, Elizabeth Dinsdale7, Eric Triplett8, Mark Pauley9, William Tapprich10

    1. The College of Wooster 2. University of Pittsburgh 3. NC State 4. Worcester Polytechnic Institute 5. Saint Vincent College 6. Georgetown University 7. San Diego State University 8. University of Florida 9. National Science Foundation 10. University of Nebraska-Omaha

    To efficiently and effectively integrate bioinformatics instruction into undergraduate life science curricula, educators would benefit from open access, high-quality learning resources (LRs) for...

    https://qubeshub.org/publications/1979/?v=1

  6. Yeti or not: Do they exist?

    14 May 2020 | Teaching Materials | Contributor(s):

    By Keith Johnson

    Bradley University College of Liberal Arts and Sciences

    Through this 2-part bioinformatics case study, students will be led through the forensic analysis of putative Yeti artifacts based on published findings.

    https://qubeshub.org/publications/1832/?v=1

  7. Needleman - Wunsch Algorithm Exercise

    22 Apr 2020 | Teaching Materials | Contributor(s):

    By Michael Sierk1, Sam S Donovan2, Neal Grandgenett, Bill Morgan3, Mark A. Pauley4, Elizabeth F Ryder5

    1. Saint Vincent College 2. University of Pittsburgh 3. The College of Wooster 4. University of Nebraska at Omaha 5. Worcester Polytechnic Institute

    This exercise is used in a sophomore-junior level bioinformatics course. The algorithm is introduced to the students who then complete the exercise.

    https://qubeshub.org/publications/28/?v=4

  8. Introduction to UNIX command line

    22 Jan 2020 | Teaching Materials | Contributor(s):

    By Serghei Mangul1, Kristen Butela2, Michael Sierk3, Lihua Stefan

    1. University of California - Los Angeles 2. University of Pittsburgh 3. Saint Vincent College

    A laboratory module for an upper-level undergraduate biology course in which students will be able to carry out simple tasks using the Unix command-line environment.

    https://qubeshub.org/publications/731/?v=2

  9. Genome Solver: Complete Set of Lessons

    23 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating with...

    https://qubeshub.org/publications/860/?v=2

  10. Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE): Recent Activities

    11 Jun 2019 | Teaching Materials | Contributor(s):

    By William Morgan

    The College of Wooster

    Presentation on NIBLSE at the 2019 Great Lakes Bioinformatics Conference

    https://qubeshub.org/publications/1210/?v=2

  11. Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE): Recent Activities

    11 Jun 2019 | Teaching Materials | Contributor(s):

    By William Morgan

    The College of Wooster

    Presentation on NIBLSE at the 2019 Great Lakes Bioinformatics Conference

    https://qubeshub.org/publications/1210/?v=1

  12. A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!

    07 Jun 2019 | Teaching Materials | Contributor(s):

    By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5

    1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University

    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    https://qubeshub.org/publications/1092/?v=2

  13. Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach

    29 May 2019 | Teaching Materials | Contributor(s):

    By Ami Erickson

    This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein...

    https://qubeshub.org/publications/1247/?v=1

  14. NIBLSE Incubators: A community-based model for the development of bioinformatics learning resources

    21 May 2019 | Teaching Materials | Contributor(s):

    By Michael Sierk1, Sam S Donovan2, Bill Morgan3, Hayley Orndorf2, Mark A. Pauley4, Sabrina Robertson5, Elizabeth F Ryder6, William Tapprich7

    1. Saint Vincent College 2. University of Pittsburgh 3. The College of Wooster 4. University of Nebraska at Omaha 5. UNC-Chapel Hill 6. Worcester Polytechnic Institute 7. University of Nebraska-Omaha

    Presentation on NIBLSE incubators at the 2019 Great Lakes Bioinformatics Conference

    https://qubeshub.org/publications/1212/?v=2

  15. Sequence Similarity Resource Adaptation: Exploring Ebola Virus

    16 May 2019 | Teaching Materials | Contributor(s):

    By William Tapprich

    University of Nebraska-Omaha

    This adaptation of the sequence similarity resource provides biology students with a basic set of bioinformatics concepts and tools. These concepts and tools are used to explore relationships...

    https://qubeshub.org/publications/1219/?v=1

  16. NIBLSE Incubators: A community-based model for the development of bioinformatics learning resources

    15 May 2019 | Teaching Materials | Contributor(s):

    By Michael Sierk1, Sam S Donovan2, Bill Morgan3, Hayley Orndorf2, Mark A. Pauley4, Sabrina Robertson5, Elizabeth F Ryder6, William Tapprich7

    1. Saint Vincent College 2. University of Pittsburgh 3. The College of Wooster 4. University of Nebraska at Omaha 5. UNC-Chapel Hill 6. Worcester Polytechnic Institute 7. University of Nebraska-Omaha

    Presentation on NIBLSE incubators at the 2019 Great Lakes Bioinformatics Conference

    https://qubeshub.org/publications/1212/?v=1

  17. Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses

    02 May 2019 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Carlos Christopher Goller3, Sabrina Robertson3

    1. Adams State University 2. Fairmont State University 3. North Carolina State University

    This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/publications/56/?v=5

  18. NIBLSE Incubators: A community-based model for the development of bioinformatics learning resources

    29 Mar 2019 | Teaching Materials | Contributor(s):

    By Michael Sierk1, Sam S Donovan2, Bill Morgan3, Hayley Orndorf2, Mark A. Pauley4, Sabrina Robertson5, Elizabeth F Ryder6, William Tapprich7

    1. Saint Vincent College 2. University of Pittsburgh 3. The College of Wooster 4. University of Nebraska at Omaha 5. NC State 6. Worcester Polytechnic Institute 7. University of Nebraska-Omaha

    Presentation given at GLBIO 2019 on NIBLSE Incubators

    https://qubeshub.org/publications/1116/?v=1

  19. A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!

    28 Feb 2019 | Teaching Materials | Contributor(s):

    By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5

    1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University

    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    https://qubeshub.org/publications/1092/?v=1

  20. Plasmodium Problem Space

    07 Jan 2019 | Teaching Materials | Contributor(s):

    By Sam S Donovan

    University of Pittsburgh

    This problem space brings together diverse resources with the goal of helping biology teachers and learners engage in research investigations.

    https://qubeshub.org/publications/1009/?v=1