Teaching Materials (1-20 of 81)

1. BSL-4: Authorized Personnel Only

   15 Mar 2023 | Teaching Materials | Contributor(s):

   By Nicole Anthony

   Biological Sciences, Toronto District School Board

   National Center for Case Study Teaching in Science resource on the 2014 Ebola epidemic. This resource is also included in the NIBLSE Learning Resource Collection

   https://qubeshub.org/publications/795/?v=2

2. Colon Cancer: A Case of Genetic Bad Luck

   15 Mar 2023 | Teaching Materials | Contributor(s):

   By Anne M. Casper

   Eastern Michigan University

   Case study developed for an introductory genetics class published in the National Center for Case Study Teaching in Science

   https://qubeshub.org/publications/992/?v=2

3. Murder by HIV? Undergraduate edition

   14 Mar 2023 | Teaching Materials | Contributor(s):

   By Naowarat (Ann) Cheeptham¹, Laura B. Regassa², Michèle I. Shuster³

   1. Thompson Rivers University 2. Georgia Southern University 3. New Mexico State University

   Bioinformatics case study focusing on phylogenetic tree interpretation, published in the National Center for Case Study Teaching in Science

   https://qubeshub.org/publications/1004/?v=2

4. Making Change Sustainable: Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE) Meeting Review

   17 Jul 2022 | Teaching Materials | Contributor(s):

   By Inimary Toby¹, Jason Williams², Guoqing Lu³, Chao Cai⁴, Keith A. Crandall⁵, Elizabeth A. Dinsdale⁶, Jennifer Drew⁷, Nicholas P. Edgington⁸, Carlos C. Goller⁹, Neal F. Grandgenett³, Barry J. Grant¹⁰, Charles Hauser¹¹, Keith A. Johnson¹², Christopher J. Jones¹³, Nathaniel K. Jue¹⁴, John R. Jungck¹⁵, Jacob Kerby¹⁶, Adam J. Kleinschmit¹⁷, Kathryn G. Miller¹⁸, William R. Morgan¹⁹, Barbara Murdoch²⁰, George Noutsios²¹, Janelle Nunez-Castilla²², Mark Pauley²³, William R. Pearson²⁴, Sabrina D. Robertson²⁵, Srebrenka Robic²⁶, Anne Rosenwald²⁷, Yee Mey Seah²⁸, Marcia Shofner²⁹, Michael Sierk³⁰, Jessica Siltberg-Liberles²², Todd Smith³¹, Naomi A. Stover¹², William Tapprich³, Eric W. Triplett⁷, Elizabeth F. Ryder*³²

   1. University of Dallas 2. Cold Spring Harbor Laboratories 3. University of Nebraska at Omaha 4. Purdue University 5. George Washington University 6. Flinders University 7. University of Florida 8. Southern Connecticut State University 9. North Carolina State University 10. University of California San Diego 11. St. Edward's University 12. Bradley University 13. Moravian College 14. California State University Monterey Bay 15. University of Delaware 16. University of South Dakota 17. University of Dubuque 18. Washington University 19. The College of Wooster 20. Eastern Connecticut State University 21. Arizona State University 22. Florida International University 23. National Science Foundation 24. University of Virginia 25. University of North Carolina 26. Agnes Scott College 27. Georgetown University 28. University of Washington Medical Center 29. University of Maryland, College Park 30. Saint Vincent College 31. Digital World Biology 32. Worcester Polytechnic Institute

   The purpose of the meeting described in this review was to decide how best to ensure the sustainability of the Network for Integrating Bioinformatics into Life Science Education (NIBLSE; pronounced...

   https://qubeshub.org/publications/2941/?v=1

5. RNAseq data analysis using Galaxy

   02 Jul 2021 | Teaching Materials | Contributor(s):

   By Matthew Escobar¹, Sam S Donovan², Irina Makarevitch³, Bill Morgan⁴, Sabrina Robertson⁵

   1. California State University San Marcos 2. University of Pittsburgh 3. Hamline University 4. The College of Wooster 5. North Carolina State University

   This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.

   https://qubeshub.org/publications/118/?v=4

6. Sequence Similarity: A Quick Introduction to Bioconductor

   04 Jun 2021 | Teaching Materials | Contributor(s):

   By Derek Edward Sollberger

   Princeton University

   Following the Sequence Similarity exercises by Kleinschmit, et al., this tutorial will guide students in using the Bioconductor suite of R packages to likewise compute sequence similarity.

   https://qubeshub.org/publications/2410/?v=1

7. An Introduction to the R Programming Environment

   02 Jun 2021 | Teaching Materials | Contributor(s):

   By K. A. Garrett¹, P. D. Esker¹, A. H. Sparks¹

   Kansas State University

   An online module introducing students and biologists to R, published in American Phytopathological Society

   https://qubeshub.org/publications/1002/?v=2

8. Sequence Similarity: Introducing Biological Databases to Community College Biology Students

   01 Jun 2021 | Teaching Materials | Contributor(s):

   By Jennifer Katcher

   This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

   https://qubeshub.org/publications/2407/?v=1

9. Developing a phylogram from computational resources.

   01 Jun 2021 | Teaching Materials | Contributor(s):

   By Melanie Lenahan¹, Shea Cinquemani¹

   Raritan Valley Community College

   This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

   https://qubeshub.org/publications/2404/?v=1

10. Introductory Video and worksheets on Module 1 and 2 on "Sequence Similarity: An inquiry based and under the hood..."

    31 May 2021 | Teaching Materials | Contributor(s):

    By Alice Tarun

    St. Lawrence University

    The video walks the students to complete Module 1 and 2 on Sequence Similarly and Alignment adapted from Tapprich (2019) and Hudson Alpha that teaches these modules within the context of the...

    https://qubeshub.org/publications/2394/?v=1

11. The Ames Test

    08 Jan 2021 | Teaching Materials | Contributor(s):

    By Nathan Goodson-Gregg, Elizabeth A. De Stasio

    Introduction to the Ames Test, published as GSA Learning Resource

    https://qubeshub.org/publications/987/?v=2

12. Yeti or not: Do they exist?

    31 Dec 2020 | Teaching Materials | Contributor(s):

    By Keith Johnson¹, Adam Kleinschmit², Jill Rulfs³, William (Bill) Morgan⁴

    1. Bradley University College of Liberal Arts and Sciences 2. University of Dubuque 3. Worcester Polytechnic Institute 4. The College of Wooster

    Through this 4-part bioinformatics case study, students will be led through the forensic analysis of putative Yeti artifacts based on published findings.

    https://qubeshub.org/publications/1832/?v=3

13. NIBLSE Collaborative Community Model for developing, disseminating, and assessing bioinformatics learning resources

    08 Dec 2020 | Teaching Materials | Contributor(s):

    By William (Bill) Morgan¹, Adam Kleinschmit², Anne Rosenwald³, Eric Triplett⁴, Mark A. Pauley⁵, William Tapprich⁶

    1. The College of Wooster 2. University of Dubuque 3. Georgetown University 4. University of Florida 5. University of Nebraska at Omaha 6. University of Nebraska-Omaha

    The Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE) has cultivated a collaborative community model to facilitate the development, dissemination, and assessment of...

    https://qubeshub.org/publications/2177/?v=1

14. A Critical Guide to the UniProtKB Flat-file Format

    05 Dec 2020 | Teaching Materials | Contributor(s):

    By Teresa Attwood¹, GOBLET Foundation

    The University of Manchester, Manchester, UK

    This Critical Guide briefly presents the need for biological databases and for a standard format for storing and organising biological data.

    https://qubeshub.org/publications/2175/?v=1

15. A Critical Guide to the PDB

    05 Dec 2020 | Teaching Materials | Contributor(s):

    By Teresa Attwood¹, GOBLET Foundation

    The University of Manchester, Manchester, UK

    This Critical Guide in the Introduction to Bioinformatics series provides a brief outline of the Protein Data Bank – the PDB – the world’s primary repository of biological macromolecular structures.

    https://qubeshub.org/publications/2174/?v=1

16. A Critical Guide to BLAST

    04 Dec 2020 | Teaching Materials | Contributor(s):

    By Teresa Attwood¹, GOBLET Foundation

    The University of Manchester, Manchester, UK

    This Critical Guide in the Introduction to Bioinformatics series provides an overview of the BLAST similarity search tool, briefly examining the underlying algorithm and its rise to popularity.

    https://qubeshub.org/publications/2172/?v=1

17. A Critical Guide to Unix

    04 Dec 2020 | Teaching Materials | Contributor(s):

    By Teresa Attwood¹, GOBLET Foundation²

    1. The University of Manchester, Manchester, UK 2. Global Organisation for Bioinformatics Learning, Education & Training

    This Critical Guide in the Introduction to Bioinformatics series briefly introduces the Unix Operating System, and provides a subset of some of the most helpful and commonly used commands....

    https://qubeshub.org/publications/2162/?v=1

18. Bioinformatics: the Power of Computers in Biology – a Practical Guide

    03 Dec 2020 | Teaching Materials | Contributor(s):

    By Daniel Barker¹, Heleen Plaisier², Stevie Anne Bain¹, Teresa Attwood

    1. The University of Edinburgh, Edinburgh, UK 2. Royal Botanic Garden, Edinburgh, UK

    This Practical Guide in the Bringing Bioinformatics into the Classroom series introduces simple bioinformatics approaches for database searching and sequence analysis.

    https://qubeshub.org/publications/2159/?v=1

19. BSL-4: Authorized Personnel Only

    17 Aug 2020 | Teaching Materials | Contributor(s):

    By Nicole Anthony

    Biological Sciences, Toronto District School Board

    National Center for Case Study Teaching in Science resource on the 2014 Ebola epidemic. This resource is also included in the NIBLSE Learning Resource Collection

    https://qubeshub.org/publications/795/?v=1

20. Genomics Education Alliance: A Collection of Posters for the 2020 BIOME Institute.

    23 Jul 2020 | Teaching Materials | Contributor(s):

    By Vince Buonaccorsi¹, Marcella Denise Cervantes², Douglas L Chalker³, Anne Rosenwald⁴, Emily Wiley⁵, Jason Williams

    1. Juniata College 2. Albion College 3. Washington University in St. Louis 4. Georgetown University 5. Claremont McKenna College

    This is a collection of posters from members of the Genomics Education Alliance (GEA) that will be presented at the 2020 BIOME Institute.

    https://qubeshub.org/publications/1973/?v=1