You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Build-a-Genome Lab Manual for RFP Synthesis
    This lab manual describes a multi-week lab project for the design, assembly from oliognucleotides, cloning, and sequencing of the RFP gene. This resource was developed as part of NSF Award...
    860

    views

    490

    downloads

    0

    comments

    0

    adaptations

    Build-a-Phage Lab Manual
    This is a lab manual for phage genome synthesis that includes both Building Block synthesis and Semi-synthetic assembly.
    1402

    views

    676

    downloads

    0

    comments

    0

    adaptations

    BAG Lab Manual Yeast
    This is the lab manual for yeast chromosome synthesis
    1165

    views

    399

    downloads

    0

    comments

    0

    adaptations

    Yeast Scramble Lab Manual v3
    This laboratory manual includes protocols for SCRaMbling of yeast cells as well as phenotypic characterization. Appropriate student exercises are also included. This resource was developed as part...
    1532

    views

    181

    downloads

    0

    comments

    0

    adaptations

    Implicit Bias in Data Visualization (BIOME 2022 presentation)
    We want to build cooperative spaces where students can improve the quality of their work in iterative ways. However, are we sure that students will rate each other in unbiased ways. We will take...
    566

    views

    535

    downloads

    0

    comments

    0

    adaptations

    Understanding Action Potential and Frequency Coding using Scientist Spotlight and Data Nuggets
    The main crux of this activity is to integrate three existing frameworks including ideas of the Scientist Spotlight Initiative, build and solidify the quantitative reasoning skills in our students...
    878

    views

    598

    downloads

    0

    comments

    0

    adaptations

    Highlights of the Hewlett-Foundation Grant Award to Bates College (February 2021)
    End-of grant highlights of the Hewlett-Foundation grant award to Bates College: Supporting more equitable and sustainable open education across STEM
    710

    views

    308

    downloads

    0

    comments

    0

    adaptations

    HF Bates Mid Year Progress Report
    Mid-year highlights of the Hewlett Foundation Grant Award to Bates College: Supporting more equitable and sustainable open education across STEM

    Keywords: STEM Evaluation

    814

    views

    212

    downloads

    0

    comments

    0

    adaptations

    Cell Collective: Computational Modeling and Simulation Designed with the Classroom in Mind
    This working group collaborated on content and pedagogy surrounding the use of Cell Collective to integrate computational modeling and simulation into undergraduate biology curriculum.
    936

    views

    793

    downloads

    0

    comments

    0

    adaptations

    Ethics in Synthetic Biology
    This collection of five activities provide students with an introduction to thinking about ethical concerns in human genome synthesis, gene editing, metabolic engineering, and synthetic genomes.

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

    1090

    views

    232

    downloads

    0

    comments

    0

    adaptations

    Yeast Scramble Lab Manual
    This laboratory manual includes protocols for SCRaMbling of yeast cells as well as phenotypic characterization. Appropriate student exercises are also included. This resource was developed as part...
    817

    views

    311

    downloads

    0

    comments

    0

    adaptations

    Should we synthesize a human genome?
    Two articles introducing the Human Genome Project-Write and asking questions about the ethics of the project.

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

    1287

    views

    721

    downloads

    0

    comments

    0

    adaptations

    1-007-AntTunnelBuilding-ModelingScenario
    We pose the prospect of modeling just how long an ant takes to build a tunnel. With a bit of guidance students produce a model for the time it takes to build a tunnel of length x into the side of a...

    Keywords: Spanishhormigatúnelanttunnel

    894

    views

    972

    downloads

    0

    comments

    0

    adaptations

    2015-Cano-EtAl-Bringing partial differential equations to life for students
    This work describes how to use an authoring tool, Easy Java Simulations, to build interactive simulations using FreeFem++ (Hecht F 2012 J. Numer. Math. 20 251) as a PDE solver engine.

    Keywords: Java SimulationFreeFemauthoring toolsauthoring methodsphysical modellingclassroom teaching

    101

    views

    47

    downloads

    0

    comments

    0

    adaptations

    1-107-ClothDry-ModelingScenario
    We build a mathematical model for the rate of drying in a wet cloth while hanging in air. A model can be based on underlying physical principles (analytic) or based on observations and reasoned...

    Keywords: dryingclothevaporation

    201

    views

    202

    downloads

    0

    comments

    0

    adaptations

    Trout modeling example
    This is an open-ended modeling example using difference equations and Algebra II skills.

    Keywords: population biology

    936

    views

    170

    downloads

    0

    comments

    0

    adaptations

    1-144-HeatCool-ModelingScenario
    We offer an opportunity to build a mathematical model using Newton's Law of Cooling for a closed plastic baggie of liquid inside a liquid container.

    Keywords: temperatureNewton's Law of Coolingcooling

    161

    views

    56

    downloads

    0

    comments

    0

    adaptations

    2017-William_Bialek-Boxes and Arrows To Differential Equations
    This material uses pictures to build kinetic models of reactions and then offers analytic solutions.

    Keywords: Michaelis-MentenEnzymesubstrateDNA\kinetis

    147

    views

    63

    downloads

    0

    comments

    0

    adaptations

    Aquatic Macroinvertebrates and Urbanization: Exploring urbanization’s effect on leaf litter decomposition in six streams of Puerto Rico using R
    Urbanization effects stream ecosystems by introducing pollutants to the streams.. This has detrimental effects on the life of the streams such as the aquatic macroinvertebrates who are in charge of...

    Keywords: aquatic macroinvertebratesStream ecologyurbanizationsurban runoff

    955

    views

    589

    downloads

    0

    comments

    0

    adaptations

    Implicit Bias in Data Visualization (BIOME 2022 presentation)
    We want to build cooperative spaces where students can improve the quality of their work in iterative ways. However, are we sure that students will rate each other in unbiased ways. We will take...
    439

    views

    585

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search