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Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Hands-On, Hands-Off: The Community College Genomics (ComGen) Course-Based Undergraduate Research Experience
    Science is a process of discovery where failure is inherent and iteration is necessary, yet instructors often teach the scientific process as if it is a controlled, highly supervised, confirmatory...

    Keywords: geneticssequencingDNAbacterium

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    Get Started With GIS in Open Source Python Workshop
    There are a suite of powerful open source python libraries that can be used to work with spatial data. Learn how to use geopandas, rasterio and matplotlib to plot and manipulate spatial data in...

    Keywords: data analysisdatadata typesdata visualizationdata scienceearth sciencepythonremote sensingGeographic Information System (GIS)data science educationcomputer programmingwildfireearth anlaytics

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    Linking Intermediate Disturbance Hypothesis to Traditional Ecological Knowledge and Conservation
    Traditional Ecological Knowledge is based on deep understanding of systems from observations made over hundreds to thousands of years. This resource connects Traditional Ecological Knowledge to...

    Keywords: climate changeenvironmental justiceintermediate disturbance hypothesisTraditional ecological knowledge

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    The QUBES Resource System: Integrating open educational practices into diverse education reform communities
    Presentation on the QUBES Resource System given at the 16th Annual Open Education Conference

    Keywords: QUBESOERQUBES Resources SystemOpenEd

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    Wenxiang 3.0
    Wenxiang diagrams illustrate protein helices as spirals on a plane and thus have the advantage over helical wheels of being planar graphs. Wenxiang 3.0 extends the original version by adding...

    Keywords: bioinformaticsproteinsWenxiang

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    Phage Comparative Genomics Lab Manual
    A lab manual containing detailed instructions for several bioinformatics tools (dot plots, Phamerator maps, phylogenetic trees, and gene content similarity), all of which enable students to perform...

    Keywords: phageCUREcourse-based research experiences (CUREs)Comparative genomicsSEA-PHAGES

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    Cell Collective: Computational Modeling and Simulation Designed with the Classroom in Mind
    This working group collaborated on content and pedagogy surrounding the use of Cell Collective to integrate computational modeling and simulation into undergraduate biology curriculum.
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    Investigating human impacts on stream ecology: locally and nationally
    TIEE Module- How does nutrient pollution impact stream ecosystems locally and nationally? This is an adaptation of the module that includes statistical testing and links sections to a lab report...
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    Too much of a good thing? Exploring nutrient pollution in streams using bioindicators
    Students use data on nitrogen and phosphorus levels in streams and macrobenthic insect biodiversity to consider issues of nutrient pollution and stream health while learning to filter, summarize,...
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    Landscape Indicators:Nutrients and Macroinvertebrates
    Modification of the Investigating Human Impacts on Stream Ecology Module to emphasize landscape indicators and incorporate inclusive practices.
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    Trauma-Informed Pedagogy: Teaching in Uncertain Times
    This free online seminar is designed for educators who are interested in learning about how they can teach their students despite the presence of trauma related to CoVID-19. Tuesday, April 28,...

    Keywords: uncertaintypandemic

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    List of resources and support communities dedicated to biology undergraduate education
    Ecologists new to teaching and evidence-based teaching practices often feel alone and without support. There are resources and communities that can help them become better instructors and...

    Keywords: teaching resource

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    Data Science as a Superpower
    Presentation on data science education given at the 2019 BioQUEST & QUBES Summer Workshop

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

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    Innovative Teaching Exchange: Asking Questions in Probability Class
    This is an article in MAA's Innovative Teaching Exchange that describes strategies to get students past thoughtless number crunching, guessing, and intuition when it comes to solving probability...

    Keywords: Probabilitypedagogyteaching strategies

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    Taking a Second Look: Investigating Biology with Visual Datasets
    An article exploring the use of visual datasets as an educational aid for biology students.

    Keywords: Evolutionpedagogyclassificationphylogenyvisual learningResources @ QUBES - Teaching & Reference

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    Corrosion and Space Travel with Dr. Eliza Montgomery
    We were able to sit down with Dr. Eliza Montgomery, the Materials Engineer and Corrosion Subject Matter expert at NASA, to talk about her path in science and what she does!

    Keywords: EngineersNASA

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    Open and Accessible: Improving STEM OER using an accessibility framework
    Presentation on the STEM OER Accessibility Framework at the 2022 SIMIODE EXPO

    Keywords: SIMIODE

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    Carbon Sequestration and the Urban heat Island Effect
    An urban heat island is an urban or metropolitan area that is on average far warmer than the surrounding rural areas. In this lesson we will study the impact these warmer temperatures have on...

    Keywords: RStudiodecision treesurban ecologyCarbon sequestration of forests vegetationUrban heat island

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    Pennies to The Moon Data Byte Series
    This series of Rbyte activities explores the concept of debunking using Fermi Estimation, R, and ChatGPT.

    Keywords: RprogrammingOpen SourceOpen Sciencedata literacycalling bullProgramming practiceFermi EstimationChatGPTGoogle CoLab

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    S-JEDI Learning Group Resource
    This resource provides a curriculum for a 6 week learning group centered on examining social justice, equity, diversity, and inclusion, specifically geared to organizational leaders in open...

    Keywords: social justiceodiversity equity and inclusion

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