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Java array and random number generator, hints
16 Apr 2018 | Teaching Materials | Contributor(s):
By Hong Qin
Spelman College
Java, UTC, Fall 2017
https://qubeshub.org/publications/499/?v=1
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Java array demo, loop over assignment and print
16 Apr 2018 | Teaching Materials | Contributor(s):
By Hong Qin
Spelman College
CPSC1100, UTC, Fall 2017
https://qubeshub.org/publications/497/?v=1
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Java for-loop, investment problem, with debug flag usage demo
16 Apr 2018 | Teaching Materials | Contributor(s):
By Hong Qin
Spelman College
BigJava Chapter 6, UTC CPSC1100 Fall 2017. Debug flag usage is shown.
https://qubeshub.org/publications/494/?v=1
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Java String array demo, switch two elements in an array
16 Apr 2018 | Teaching Materials | Contributor(s):
By Hong Qin
Spelman College
CPSC1100, UTC Fall 2017
https://qubeshub.org/publications/498/?v=1
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Java String substring usage, initials
16 Apr 2018 | Teaching Materials | Contributor(s):
By Hong Qin
Spelman College
CPSC1100 Fall 2017, UTC. Big Java Chapter 4.
https://qubeshub.org/publications/492/?v=1
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Java while loop demo, investment case
16 Apr 2018 | Teaching Materials | Contributor(s):
By Hong Qin
Spelman College
BigJava Chapter 6, UTC, CPSC1100 Fall 2017
https://qubeshub.org/publications/493/?v=1
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LEAGSEA
11 Apr 2018 | Teaching Materials | Contributor(s):
By Laura Harris
Davenport University
How to perform Leading Edge Analysis in Gene Set Enrichment Analysis by Broad Institute
https://qubeshub.org/publications/466/?v=1
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Learn genomics and bioinformatics through scientific thinking, creation and analysis (virtual and hands-on)
11 Jun 2024 | Teaching Materials | Contributor(s):
By Dr Pankaj Mehrotra
University of the People, California, United States of America
Nucleic acid are biological molecules composed of nitrogen-containing bases, phosphate groups, and sugar molecules. The complimentary chemical bonding results in formation of double stranded DNA....
https://qubeshub.org/publications/4852/?v=1
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Making bioinformatics tools classroom-friendly
23 Jul 2020 | Teaching Materials | Contributor(s):
By Jason Williams, Wilson Leung1, Cornel Ghiban2
1. Washington University in St. Louis 2. Cold Spring Harbor Laboratory
Poster on using Cyverse resources to make classroom that make using bioinformatics in the classroom a more manageable experience presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity
https://qubeshub.org/publications/2000/?v=1
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Making toast: Using analogies to explore concepts in bioinformatics
26 Aug 2021 | Teaching Materials | Contributor(s):
By Kate L. Hertweck
University of Texas at Tyler
Contemporary biology is moving towards heavy reliance on computational methods to manage, find patterns, and derive meaning from large-scale data, such as genomic sequences. Biology teachers are...
https://qubeshub.org/publications/2559/?v=1
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Making toast: Using analogies to explore concepts in bioinformatics
04 Jan 2019 | Teaching Materials | Contributor(s):
By Kate L. Hertweck
University of Texas at Tyler
Module using analogies to introduce students to genomics
https://qubeshub.org/publications/1003/?v=1
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Mapping a Mutation to its Gene: The "Fly Lab" as a Modern Research Experience
29 Aug 2021 | Teaching Materials | Contributor(s):
By Derek M. Dean*1, David L. Deitcher2, David W. Loehlin1, Lois M. Banta1
1. Williams College 2. Cornell University
Although genetics is an invaluable part of the undergraduate biology curriculum, it can be intimidating to students as well as instructors: Students must reduce their reliance on memorization and...
https://qubeshub.org/publications/2707/?v=1
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Maria vs Malaria
02 Nov 2023 | Teaching Materials | Contributor(s):
By Didem Vardar-Ulu1, Serena Yu1, Alicia Lau1, Molly Szpakowski1
Boston University
This case study focuses on a specific enzyme Lactate Dehydrogenase (LDH) in the malarial parasite as a target for treating malaria.
https://qubeshub.org/publications/4551/?v=1
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Maria vs Malaria - AR Adaptation
04 Nov 2023 | Teaching Materials | Contributor(s):
By Didem Vardar-Ulu1, Saif Eldeen Ragab1, Swati Agrawal2
1. Boston University, Chemistry Department 2. University of Mary Washington
This case study focuses on a specific enzyme Lactate Dehydrogenase (LDH) in the malarial parasite as a target for treating malaria. Students will be able to view selected molecular views from the...
https://qubeshub.org/publications/4554/?v=1
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Module 1: Introduction to the Genome Browser: What is a Gene?
25 Jul 2020 | Teaching Materials | Contributor(s):
By Joyce Stamm1, Jennifer Kennell2, Wilson Leung3, Leocadia Paliulis4, Srebrenka Robic5, Anne Rosenwald6
1. University of Evansville 2. Vassar College 3. Washington University in St. Louis 4. Bucknell University 5. Agnes Scott College 6. Georgetown University
This lesson introduces the University of California Santa Cruz genome browser to students, walking them through some of the key features so that it can be used for analysis of gene structure.
https://qubeshub.org/publications/1989/?v=1
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Module 2: Transcription Part I: From DNA Sequence to Transcription Unit
25 Jul 2020 | Teaching Materials | Contributor(s):
By Maria Santisteban1, Alexa Sawa2
1. University of North Carolina - Pembroke 2. College of the Desert
This module illustrates how a primary transcript (pre-mRNA) is synthesized using a DNA molecule as the template. Students will learn about the importance of the 5' and 3' regions of the gene for...
https://qubeshub.org/publications/1990/?v=1
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Murder by HIV? Undergraduate edition
14 Mar 2023 | Teaching Materials | Contributor(s):
By Naowarat (Ann) Cheeptham1, Laura B. Regassa2, Michèle I. Shuster3
1. Thompson Rivers University 2. Georgia Southern University 3. New Mexico State University
Bioinformatics case study focusing on phylogenetic tree interpretation, published in the National Center for Case Study Teaching in Science
https://qubeshub.org/publications/1004/?v=2
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Murder by HIV? Undergraduate edition
04 Jan 2019 | Teaching Materials | Contributor(s):
By Naowarat (Ann) Cheeptham1, Laura B. Regassa2, Michèle I. Shuster3
1. Thompson Rivers University 2. Georgia Southern University 3. New Mexico State University
Bioinformatics case study focusing on phylogenetic tree interpretation, published in the National Center for Case Study Teaching in Science
https://qubeshub.org/publications/1004/?v=1
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NCBI Overview
11 Apr 2018 | Teaching Materials | Contributor(s):
By Laura Harris
Davenport University
An overview of some of the databases within NCBI and how to get FASTA sequences.
https://qubeshub.org/publications/464/?v=1
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Needleman - Wunsch Algorithm Exercise
22 Apr 2020 | Teaching Materials | Contributor(s):
By Michael Sierk1, Sam S Donovan2, Neal Grandgenett, Bill Morgan3, Mark A. Pauley4, Elizabeth F Ryder5
1. Saint Vincent College 2. University of Pittsburgh 3. The College of Wooster 4. University of Nebraska at Omaha 5. Worcester Polytechnic Institute
This exercise is used in a sophomore-junior level bioinformatics course. The algorithm is introduced to the students who then complete the exercise.
https://qubeshub.org/publications/28/?v=4