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Elizabeth Jockusch
https://qubeshub.org/community/members/26149
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Emily Nowicki
https://qubeshub.org/community/members/29507
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Erika Schwarz Taylor
https://qubeshub.org/community/members/13389
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Erin R. Morris
https://qubeshub.org/community/members/12574
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Expanding Undergraduate Participation in Computational Biology: Resources and Lessons Learned from a Hands-on Workshop
05 Jun 2019 | Teaching Materials | Contributor(s):
By Layla Oesper
Carleton College
Presentation on computational biology in undergraduate education at the 2019 Great Lakes Bioinformatics Conference
https://qubeshub.org/publications/1283/?v=1
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Exploration of the Human Genome by Investigation of Personalized SNPs
03 Jan 2019 | Teaching Materials | Contributor(s):
By Lani C. Keller
Quinnipiac University
To increase students' interest in their own genomes, this computer-based laboratory lesson is designed to be coupled with the opportunity for the students to be genotyped by the consumer sequencing...
https://qubeshub.org/publications/993/?v=1
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Exploring HIV Evolution
05 Jun 2017 | Teaching Materials | Contributor(s):
By Sam S Donovan1, Tony Weisstein2
1. University of Pittsburgh 2. Truman State University
In this activity you will study aspects of sequence evolution by working with a set of HIV sequence data from 15 different subjects (Markham, et al., 1998). You will first learn about the dataset,...
https://qubeshub.org/publications/24/?v=2
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Fatima Miro
https://qubeshub.org/community/members/42383
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Finding Selection in All the Right Places
03 Jan 2019 | Teaching Materials | Contributor(s):
By Juliet F. K. Noor, Mohamed A. F. Noor
Lab introducing students to evolutionary genetics using bioinformatics and biocuration, published as GSA Learning Resource
https://qubeshub.org/publications/994/?v=1
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Foundations of Bioinformatics (BGGN-213)
13 Apr 2018 | Teaching Materials | Contributor(s):
By Barry Grant
University of California - San Diego
This first short screen-cast introduces “Foundations of Bioinformatics” (BGGN-213) course at UCSD and covers some pre-course logistics.
https://qubeshub.org/publications/475/?v=1
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Gayle Fiser
https://qubeshub.org/community/members/12136
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GEA Introductory lesson on BLAST
25 Jul 2020 | Teaching Materials | Contributor(s):
By Justin DiAngelo1, Alexis Nagengast2, Wilson Leung3, Douglas L Chalker3
1. Penn State Berks 2. Widener University 3. Washington University in St. Louis
The "Introduction to BLAST using Human Leptin" exercise aims to introduce students to the use of the Basic Local Alignment Search Tool (BLAST) to identify related sequences and compare similarity...
https://qubeshub.org/publications/1987/?v=1
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GEA Introductory lesson on RNA-Seq
25 Jul 2020 | Teaching Materials | Contributor(s):
By Jason Williams1, Judy Brusslan2, Ray Enke3, Matthew Escobar4, Vince Buonaccorsi5
1. Cold Spring Harbor Laboratory 2. California State University Long Beach 3. James Madison University 4. California State University San Marcos 5. Juniata College
This RNA-Seq lesson uses the CyVerse VICE Platform and Jupyter notebooks to examine the expression of the leptin gene in samples from a mouse experimental design evaluating diet (high-fat vs....
https://qubeshub.org/publications/1988/?v=1
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GENI-ACT
24 Jan 2016 |
GENI-ACT allows collaborative genome annotation. Researchers or students can collectively suggest changes to an existing genome with supporting evidence. Changes can be ported back to genbank by exporting to a sequin file format. GENI-ACT also has ported the education components from IMG-ACT....
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Genome Solver: Building faculty skills in bioinformatics
23 Jul 2020 | Teaching Materials | Contributor(s):
By Vinayak Mathur1, Gaurav Arora2, Vinodh Ganesan3, Hita Gupta4, Mariana Kazarian5, Anne Rosenwald6
1. Cabrini University 2. Gallaudet University 3. Temple University 4. Conestoga High School 5. Horace Mann School 6. Georgetown University
Genome Solver (GS) began in 2011 as an NSF-funded project for faculty training in basic web-based bioinformatics skills.
https://qubeshub.org/publications/1974/?v=1
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Genome Solver: Complete Set of Lessons
23 Oct 2019 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating with...
https://qubeshub.org/publications/860/?v=2
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Geoscience Methods and Resources for K-5 Pre-Education Majors
28 May 2018 | Teaching Materials | Contributor(s):
By James Burton Deemy
College of Coastal Georgia
: Exploring Geoscience Methods was an excellent capstone experience for Elementary Education Majors. The class I used this module with was 24 students of various backgrounds and academic...
https://qubeshub.org/publications/572/?v=1
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Gina Kirsammer
https://qubeshub.org/community/members/37647
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May 19 2019
Great Lakes Bioinformatics Conference
The conference is organized by the Great Lakes Bioinformatics Consortium to provide an interdisciplinary forum for the discussion of research findings and methods. An important goal for the...
https://qubeshub.org/news/events/details/1705
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GSEAtheory
10 Apr 2018 | Teaching Materials | Contributor(s):
By Laura Harris
Davenport University
Brief introduction to how gene set enrichment analysis works.
https://qubeshub.org/publications/462/?v=1