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Advances in Genome Sequencing with Nathan Olson
25 Apr 2022 | Teaching Materials | Contributor(s):
By Nathan Olson1, Megan Seifert2
1. National Institute of Standards and Technology 2. Headwaters Science Institute
In this Lunch with a Scientist episode, we discuss Genome Sequencing and Bioinformatics with National Institute of Standards and Technology (NIST) biologist Nate Olson, Ph.D.
https://qubeshub.org/publications/2937/?v=1
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Applying phylogenetic tree building in MEGA X to forensic applications for identifying unknown specimens
10 Feb 2022 | Teaching Materials | Contributor(s):
By Nicholas Lorusso1, Maria Shumskaya2, Denise Gemmellaro2
1. University of North Texas at Dallas 2. Kean University
This exercise is designed to guide a learner through the construction of phylogenetic trees as a means of addressing research questions in forensic science such as the identification of previously...
https://qubeshub.org/publications/2567/?v=2
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Applying phylogenetic tree building in MEGA X to forensic applications for identifying unknown specimens
30 Aug 2021 | Teaching Materials | Contributor(s):
By Nicholas Lorusso1, Denise Gemmellaro2
1. University of North Texas at Dallas 2. Kean University
This exercise is designed to guide a learner through the construction of phylogenetic trees as a means of addressing research questions in forensic science such as the identification of previously...
https://qubeshub.org/publications/2567/?v=1
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BLAST Exercises for Analyzing Cloning Results
09 Jan 2020 | Teaching Materials | Contributor(s):
By Erin R. Morris
Baker University
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. These activities have modified Lesson 1: Introduction to Genome...
https://qubeshub.org/publications/1734/?v=1
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Build Multiomic and Visualization Skills in Bioscience Lecture
19 Nov 2022 | Teaching Materials | Contributor(s):
By Xyanthine Parillon
student
This resource promotes inclusive learning by using all free platforms to extend the central dogma to an applied experience. Genomics is focused on with literature reviews that are performed to...
https://qubeshub.org/publications/3574/?v=1
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Complete Set of Lessons
01 Nov 2018 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating with...
https://qubeshub.org/publications/860/?v=1
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Databases: A Study of Influenza
09 Jan 2020 | Teaching Materials | Contributor(s):
By Selene Nikaido
University of Central Missouri
This lesson introduces the student to the Influenza Research Database. Students will select Influenza genome sequences to see how they are related. Students tests hypotheses about evolutionary...
https://qubeshub.org/publications/1642/?v=1
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Exploring the evolution of caffeine biosynthesis enzymes
22 Jan 2020 | Teaching Materials | Contributor(s):
By Shuchismita Dutta
RCSB Protein Data Bank, Rutgers University
Caffeine is a very common stimulant consume worldwide as tea, coffee, mate, cocoa, and chocolate. Ever wondered why plants make caffeine? Do all caffeine producing plants have the same enzymes for...
https://qubeshub.org/publications/1723/?v=1
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Genome Sequence Data in R using Biostrings (Swirl Lesson)
09 Jun 2020 | Teaching Materials | Contributor(s):
By Robert E Furrow
University of California, Davis
By the end of this lesson, students should be able to load FASTA files into R as DNAStringSets and use width() and alphabetFrequency(), combined with other functions like sum() and mean(), to...
https://qubeshub.org/publications/1898/?v=1
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Genome Solver: Complete Set of Lessons
23 Oct 2019 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating with...
https://qubeshub.org/publications/860/?v=2
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Introduction to Genome Annotation
09 Jan 2020 | Teaching Materials | Contributor(s):
By Selene Nikaido
University of Central Missouri
This exercise is an adaptation of the Annotation Lesson by Rosenwald et al. It introduces the use of bioinformatics tools to extract information from genome databases. It is a basic lesson on...
https://qubeshub.org/publications/1560/?v=1
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Lesson I - Introduction to Genome Solver
31 Oct 2018 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Part I is the Introduction to the Genome Solver Project.
https://qubeshub.org/publications/808/?v=1
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Lesson II - Databases
30 Sep 2022 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson II introduces the principal databases for microbial...
https://qubeshub.org/publications/855/?v=3
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Lesson II - Databases
30 Sep 2022 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson II introduces the principal databases for microbial...
https://qubeshub.org/publications/855/?v=2
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Lesson II - Databases
31 Oct 2018 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson II introduces the principal databases for microbial...
https://qubeshub.org/publications/855/?v=1
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Lesson III - Annotation
30 Sep 2022 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...
https://qubeshub.org/publications/856/?v=4
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Lesson III - Annotation
05 Aug 2020 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...
https://qubeshub.org/publications/856/?v=3
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Lesson III - Annotation
10 Oct 2019 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...
https://qubeshub.org/publications/856/?v=2
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Lesson III - Annotation
31 Oct 2018 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...
https://qubeshub.org/publications/856/?v=1
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Lesson IV - Comparative Genomics
10 Oct 2019 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson IV, Comparative Genomics, discusses some of the tools...
https://qubeshub.org/publications/857/?v=2