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Pat Calie
https://qubeshub.org/community/members/19272
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Smeeta Shrestha
https://qubeshub.org/community/members/18754
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Erika N Schwarz Taylor
https://qubeshub.org/community/members/18320
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Steven Cresawn
https://qubeshub.org/community/members/17513
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Damilola Olatunji
https://qubeshub.org/community/members/17443
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Pre-lesson: Introduction to BLAST
05 Aug 2020 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. This pre-lesson introduces the BLAST tool.
https://qubeshub.org/publications/1085/?v=2
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Lesson III - Annotation
05 Aug 2020 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...
https://qubeshub.org/publications/856/?v=3
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Rekha Meyer
https://qubeshub.org/community/members/17211
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Emily Wiley
https://qubeshub.org/community/members/16856
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Genome Sequence Data in R using Biostrings (Swirl Lesson)
09 Jun 2020 | Teaching Materials | Contributor(s):
By Robert E Furrow
University of California, Davis
By the end of this lesson, students should be able to load FASTA files into R as DNAStringSets and use width() and alphabetFrequency(), combined with other functions like sum() and mean(), to...
https://qubeshub.org/publications/1898/?v=1
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Rodolfo Aramayo
https://qubeshub.org/community/members/15670
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Jo Marie Bacusmo
https://qubeshub.org/community/members/15264
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Exploring the evolution of caffeine biosynthesis enzymes
22 Jan 2020 | Teaching Materials | Contributor(s):
By Shuchismita Dutta
RCSB Protein Data Bank, Rutgers University
Caffeine is a very common stimulant consume worldwide as tea, coffee, mate, cocoa, and chocolate. Ever wondered why plants make caffeine? Do all caffeine producing plants have the same enzymes for...
https://qubeshub.org/publications/1723/?v=1
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BLAST Exercises for Analyzing Cloning Results
09 Jan 2020 | Teaching Materials | Contributor(s):
By Erin R. Morris
Baker University
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. These activities have modified Lesson 1: Introduction to Genome...
https://qubeshub.org/publications/1734/?v=1
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Databases: A Study of Influenza
09 Jan 2020 | Teaching Materials | Contributor(s):
By Selene Nikaido
University of Central Missouri
This lesson introduces the student to the Influenza Research Database. Students will select Influenza genome sequences to see how they are related. Students tests hypotheses about evolutionary...
https://qubeshub.org/publications/1642/?v=1
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Introduction to Genome Annotation
09 Jan 2020 | Teaching Materials | Contributor(s):
By Selene Nikaido
University of Central Missouri
This exercise is an adaptation of the Annotation Lesson by Rosenwald et al. It introduces the use of bioinformatics tools to extract information from genome databases. It is a basic lesson on...
https://qubeshub.org/publications/1560/?v=1
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Katie M. Sandlin
Ms. Katie M. Sandlin is a proud first-generation college student who obtained both her Bachelor and Master of Science in Biology from The University of Alabama. She was a McNair Scholar and has...
https://qubeshub.org/community/members/14415
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Lesson VI - The Community Science Project
19 Nov 2019 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
Genome Solver's Community Science Project was developed as a way to use the skills taught in the previous lessons. We're asking members of the community to provide instances of potential phage...
https://qubeshub.org/publications/859/?v=2
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Genome Solver: Complete Set of Lessons
23 Oct 2019 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating with...
https://qubeshub.org/publications/860/?v=2
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Lesson V - Phylogenetics
22 Oct 2019 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson V is an introduction to Phylogenetics.
https://qubeshub.org/publications/858/?v=2