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Introduction to nucleotide sequence analysis and protein modeling in MEGA and PyMol using coronavirus SARS-CoV-2
03 Apr 2020 | Teaching Materials | Contributor(s):
By Maria Shumskaya1, Nicholas Lorusso2
1. Kean University 2. University of North Texas at Dallas
Introduction into computational approaches in phylogeny and protein modeling based on coronavirus SARS-CoV-2 (caused COVID-19 pandemic). Two self-guided tutorials for standard lab classes of 2.5...
https://qubeshub.org/publications/1796/?v=1
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Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach
29 May 2019 | Teaching Materials | Contributor(s):
By Ami Erickson
This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein...
https://qubeshub.org/publications/1247/?v=1
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Sequence Similarity Resource Adaptation: Exploring Ebola Virus
16 May 2019 | Teaching Materials | Contributor(s):
By William Tapprich
University of Nebraska-Omaha
This adaptation of the sequence similarity resource provides biology students with a basic set of bioinformatics concepts and tools. These concepts and tools are used to explore relationships...
https://qubeshub.org/publications/1219/?v=1
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Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses
02 May 2019 | Teaching Materials | Contributor(s):
By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Carlos Christopher Goller3, Sabrina Robertson3
1. Adams State University 2. Fairmont State University 3. North Carolina State University
This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.
https://qubeshub.org/publications/56/?v=5
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Bioinformatics - Investigating Sequence Similarity
04 Dec 2018 | Teaching Materials | Contributor(s):
By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Carlos Christopher Goller3, Sabrina Robertson3
1. Adams State University 2. Fairmont State University 3. North Carolina State University
This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.
https://qubeshub.org/publications/56/?v=4
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The Evolution of Color Vision in Monkeys: From Nucleotides to Ecology
23 Oct 2018 | Teaching Materials | Contributor(s):
By Merle Heidemann1, Peter J.T. White1, Jim Smith1
Michigan State University
This case study examines the evolution color vision in Old World and New World monkeys from multiple biological perspectives.
https://qubeshub.org/publications/843/?v=1
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Using DNA Subway to Analyze Sequence Relationships
28 May 2018 | Teaching Materials | Contributor(s):
By Jason Williams1, Ray A. Enke2, Oliver Hyman2, Emily Lescak3, Sam S Donovan4, William Tapprich5, Elizabeth F Ryder6
1. DNA Learning Center 2. The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University 3. University of Alaska 4. University of Pittsburgh 5. University of Nebraska-Omaha 6. Worcester Polytechnic Institute
This is a bioinformatics exercise using the DNA Subway Blue Line, a user-friendly pipeline of bioinformatics tools, to analyze a collection of mosquito DNA bar-code sequences.
https://qubeshub.org/publications/165/?v=2
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Intro to DNA Barcoding
28 May 2018 | Teaching Materials | Contributor(s):
By Oliver Hyman1, Andrea Pesce2, Elizabeth Doyle2, Ray A Enke1
1. The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University 2. James Madison University
This is a classroom tested introductory lesson & activity to introduce DNA Barcoding and DNA Subway Blue Line. It is for novices and will fit into a 30-45 min lecture or lab class period.
https://qubeshub.org/publications/600/?v=1
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Intro to DNA Subway Blue Line
28 May 2018 | Teaching Materials | Contributor(s):
By Oliver Hyman1, Andrea Pesce2, Elizabeth Doyle2, Ray A Enke1
1. The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University 2. James Madison University
This is a classroom tested introductory lesson & activity to introduce DNA Barcoding and DNA Subway Blue Line. It is for novices and will fit into a 1 hr 50 min lecture or lab class period.
https://qubeshub.org/publications/599/?v=1
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E. coli Citrate Use
09 Feb 2018 | Teaching Materials | Contributor(s):
By Peter White1, Alexa Warwick1, Louise Mead2, Merle Heidemann, Jim Smith1
1. Michigan State University 2. BEACON Center for the Study of Evolution in Action
EvoEd module on citrate use in E.coli
https://qubeshub.org/publications/357/?v=1
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Monkey Opsins
09 Feb 2018 | Teaching Materials | Contributor(s):
By Peter White1, Alexa Warwick1, Louise Mead2, Merle Heidemann1, Jim Smith1
1. Michigan State University 2. BEACON Center for the Study of Evolution in Action
This case will examine the evolution of trichromatic vision in old world monkeys.
https://qubeshub.org/publications/356/?v=1
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DNA Subway Learning Resources
18 Oct 2017 | Teaching Materials | Contributor(s):
By Jason Williams
DNA Learning Center
DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.
https://qubeshub.org/publications/164/?v=2
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Using DNA Subway to Analyze Sequence Relationships
18 Oct 2017 | Teaching Materials | Contributor(s):
By Jason Williams
DNA Learning Center
This is a bioinformatics exercise using DNA Subway
https://qubeshub.org/publications/165/?v=1
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DNA Subway Learning Resources
16 Oct 2017 | Teaching Materials | Contributor(s):
By Jason Williams
Cold Spring Harbor Laboratory
DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.
https://qubeshub.org/publications/164/?v=1
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Bioinformatics - Investigating Sequence Similarity
05 Jul 2017 | Teaching Materials | Contributor(s):
By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3, Carlos Christopher Goller4, Sabrina Robertson5
1. Adams State University 2. Hampshire College 3. Alabama State University 4. North Carolina State University 5. NC State
This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.
https://qubeshub.org/publications/56/?v=3
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Bioinformatics - Investigating Sequence Similarity
05 Jun 2017 | Teaching Materials | Contributor(s):
By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3
1. Adams State University 2. Hampshire College 3. Alabama State University
This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.
https://qubeshub.org/publications/56/?v=2
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Bioinformatics - Investigating Sequence Similarity
31 Jan 2017 | Teaching Materials | Contributor(s):
By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3
1. Adams State University 2. Hampshire College 3. Alabama State University
This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.
https://qubeshub.org/publications/56/?v=1