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An Introduction to Biodiversity Databases and Specimen Images
04 Dec 2019 | Teaching Materials | Contributor(s):
By Amanda Fisher
Long Beach State University
In this module, students will be introduced to some biodiversity data resources and how to search for and download herbarium specimen images. They will be asked to think critically about the...
Neochromosomes: Creating transcriptional units with yeast Golden Gate assembly
29 Oct 2019 | Teaching Materials | Contributor(s):
By Eric Cooper
This resource is a series of protocols using the yeast Golden Gate (yGG) method as developed by Neta Agmon and Leslie Mitchell in Jef Boeke’s lab to assemble a functional yeast gene with...
28 Oct 2019 | Teaching Materials | Contributor(s):
A Curious Display
By Margaret Waterman1, Brandon Call, Sandi Connelly2, Kristin Jenkins3, Sam Catherine Johnston4, Vedham Karpakakunjaram5, Viet Le6, Hayley Orndorf7, Melissa Skyer8, Barbara Spiecker9
1. Southeast Missouri State University 2. Rochester Institute Of Technology 3. BioQUEST 4. CAST Inc. 5. Montgomery College 6. Rochester Institute of Technology 7. University of Pittsburgh 8. National Technical Institute for the Deaf at Rochester Institute of Technology 9. Oregon State University
Case study on genetically modified organisms
Introduction to Data Management and Metadata using NEON aquatic macroinvertebrate data
30 Sep 2019 | Teaching Materials | Contributor(s):
By Kaitlin Stack Whitney
Rochester Institute of Technology
This lesson focuses on understanding metadata, the data about the data, using aquatic macroinvertebrate abundance and species information from a variety of NEON sampling locations.
REMNet Tutorial, R Part 5: Normalizing Microbiome Data in R 5.2.19
28 Aug 2019 | Teaching Materials | Contributor(s):
By Jessica Joyner
CUNY Brooklyn College
Video on normalizing microbiome data from the Research Experiences in Microbiomes Network
REMNet Tutorial, R Part 4: Creating Taxa Plots in R 5.2.19
Video on making taxa bar plots in R from the Research Experiences in Microbiomes Network
Using Synthetic Biology to Teach Data Science
30 Jul 2019 | Teaching Materials | Contributor(s):
By Margaret S Saha1, Beteel Abu-Ageel1, Sanjana Challa1, Xiangyi Fang1, Chai Hibbert1, Anna Isler1, Elias Nafziger1, Adam Oliver1, Hanqiu Peng1, Julia Urban1, Vivian Zhu1
College of William and Mary
Poster and supplemental materials on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.
Examining human impacts on tusk evolution in elephants using authentic research data using Serenity
13 Jul 2019 | Teaching Materials | Contributor(s):
By Kaitlin Bonner
St. John Fisher College
In this activity students explore and analyze real, authentic research data paired with HHMI’s “Selection for Tuskless Elephants” video in a hands-on investigation of human impacts on elephant...
26 Jun 2019 | Teaching Materials | Contributor(s):
Abstract for poster on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.
Does Organelle Shape Matter? Exploring Cell Shape through the Allen Cell Explorer and High-content Microscopy Datasets
12 Jun 2019 | Teaching Materials | Contributor(s):
By Carlos Christopher Goller1, Kaitlyn Casimo
North Carolina State University
The morphology and localization of structures inside the cell are often assumed to fit the ideal images found in biology textbooks. This interrupted case study using high-throughput microscopy data...
11 Jun 2019 | Teaching Materials | Contributor(s):
By James Burton Deemy
College of Coastal Georgia
In this exercise students work in groups to design an agroecosystem to feed a Mars Colony while accounting for space and energy transfer limitations.
This is an exercise in island biogeography that allows students to reconstruct splits in the evolutionary history of several hypothetical frog species.
A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!
07 Jun 2019 | Teaching Materials | Contributor(s):
By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5
1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University
This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.
Exploring how climate will impact plant-insect distributions and interactions using open data and informatics
06 Jun 2019 | Teaching Materials | Contributor(s):
By Wendy Clement1, Kathleen Prudic2, Jeffrey Oliver3
1. The College of New Jersey 2. University of Arizona 3. University of Arizona Libraries
This teaching module provides an entry point for students to learn about data science, open data repositories (e.g., citizen science data), and species distribution modeling to study the effects of...
Figure of the Day - Teaching Notes - Boersma
01 Jun 2019 | Teaching Materials | Contributor(s):
By Kate S Boersma
University of San Diego
Teaching notes from my application of Figure of the Day in my BIOL305 Ecology lecture course for biology majors.
Introduction to Growth Mindset - Teaching Notes - Boersma
Teaching notes from my use of BIOMAAP Growth Mindset teaching materials in my 300 level Ecology class for majors.
Modification of "Exploring the population dynamics of wintering bald eagles through long-term data" module
30 May 2019 | Teaching Materials | Contributor(s):
This module is a modification of the Beckstead et al. module in TIEE Volume 7. It includes a meta-cognition based model and self reflection, no statistics, and is organized to be done in 1-2...
Processes that Regulate Patterns of Species and Genetic Diversity
29 May 2019 | Teaching Materials | Contributor(s):
By Jillian K. Decker
State University of New York - Rockland Community College
This activity was developed for an undergraduate upper level ecology course for Environmental or Biological Science majors. Classes of ~20 students work best for the activity.
Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach
By Ami Erickson
This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein...