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1. An Introduction to Biodiversity Databases and Specimen Images

   04 Dec 2019 | Teaching Materials | Contributor(s):

   By Amanda Fisher

   Long Beach State University

   In this module, students will be introduced to some biodiversity data resources and how to search for and download herbarium specimen images. They will be asked to think critically about the...

   https://qubeshub.org/qubesresources/publications/1493/?v=1

2. Neochromosomes: Creating transcriptional units with yeast Golden Gate assembly

   29 Oct 2019 | Teaching Materials | Contributor(s):

   By Eric Cooper

   Hartwick College

   This resource is a series of protocols using the yeast Golden Gate (yGG) method as developed by Neta Agmon and Leslie Mitchell in Jef Boeke’s lab to assemble a functional yeast gene with...

   https://qubeshub.org/qubesresources/publications/1453/?v=2

3. Neochromosomes: Creating transcriptional units with yeast Golden Gate assembly

   28 Oct 2019 | Teaching Materials | Contributor(s):

   By Eric Cooper

   Hartwick College

   This resource is a series of protocols using the yeast Golden Gate (yGG) method as developed by Neta Agmon and Leslie Mitchell in Jef Boeke’s lab to assemble a functional yeast gene with...

   https://qubeshub.org/qubesresources/publications/1453/?v=1

4. A Curious Display

   28 Oct 2019 | Teaching Materials | Contributor(s):

   By Margaret Waterman¹, Brandon Call, Sandi Connelly², Kristin Jenkins³, Sam Catherine Johnston⁴, Vedham Karpakakunjaram⁵, Viet Le⁶, Hayley Orndorf⁷, Melissa Skyer⁸, Barbara Spiecker⁹

   1. Southeast Missouri State University 2. Rochester Institute Of Technology 3. BioQUEST 4. CAST Inc. 5. Montgomery College 6. Rochester Institute of Technology 7. University of Pittsburgh 8. National Technical Institute for the Deaf at Rochester Institute of Technology 9. Oregon State University

   Case study on genetically modified organisms

   https://qubeshub.org/qubesresources/publications/1452/?v=1

5. Introduction to Data Management and Metadata using NEON aquatic macroinvertebrate data

   30 Sep 2019 | Teaching Materials | Contributor(s):

   By Kaitlin Stack Whitney

   Rochester Institute of Technology

   This lesson focuses on understanding metadata, the data about the data, using aquatic macroinvertebrate abundance and species information from a variety of NEON sampling locations.

   https://qubeshub.org/qubesresources/publications/1429/?v=1

6. REMNet Tutorial, R Part 5: Normalizing Microbiome Data in R 5.2.19

   28 Aug 2019 | Teaching Materials | Contributor(s):

   By Jessica Joyner

   CUNY Brooklyn College

   Video on normalizing microbiome data from the Research Experiences in Microbiomes Network

   https://qubeshub.org/qubesresources/publications/1314/?v=1

7. REMNet Tutorial, R Part 4: Creating Taxa Plots in R 5.2.19

   28 Aug 2019 | Teaching Materials | Contributor(s):

   By Jessica Joyner

   CUNY Brooklyn College

   Video on making taxa bar plots in R from the Research Experiences in Microbiomes Network

   https://qubeshub.org/qubesresources/publications/1313/?v=1

8. Using Synthetic Biology to Teach Data Science

   30 Jul 2019 | Teaching Materials | Contributor(s):

   By Margaret S Saha¹, Beteel Abu-Ageel¹, Sanjana Challa¹, Xiangyi Fang¹, Chai Hibbert¹, Anna Isler¹, Elias Nafziger¹, Adam Oliver¹, Hanqiu Peng¹, Julia Urban¹, Vivian Zhu¹

   College of William and Mary

   Poster and supplemental materials on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.

   https://qubeshub.org/qubesresources/publications/1326/?v=2

9. Examining human impacts on tusk evolution in elephants using authentic research data using Serenity

   13 Jul 2019 | Teaching Materials | Contributor(s):

   By Kaitlin Bonner

   St. John Fisher College

   In this activity students explore and analyze real, authentic research data paired with HHMI’s “Selection for Tuskless Elephants” video in a hands-on investigation of human impacts on elephant...

   https://qubeshub.org/qubesresources/publications/1350/?v=1

10. Using Synthetic Biology to Teach Data Science

    26 Jun 2019 | Teaching Materials | Contributor(s):

    By Margaret S Saha¹, Beteel Abu-Ageel¹, Sanjana Challa¹, Xiangyi Fang¹, Chai Hibbert¹, Anna Isler¹, Elias Nafziger¹, Adam Oliver¹, Hanqiu Peng¹, Julia Urban¹, Vivian Zhu¹

    College of William and Mary

    Abstract for poster on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.

    https://qubeshub.org/qubesresources/publications/1326/?v=1

11. Does Organelle Shape Matter? Exploring Cell Shape through the Allen Cell Explorer and High-content Microscopy Datasets

    12 Jun 2019 | Teaching Materials | Contributor(s):

    By Carlos Christopher Goller¹, Kaitlyn Casimo

    North Carolina State University

    The morphology and localization of structures inside the cell are often assumed to fit the ideal images found in biology textbooks. This interrupted case study using high-throughput microscopy data...

    https://qubeshub.org/qubesresources/publications/798/?v=1

12. Mars Colony

    11 Jun 2019 | Teaching Materials | Contributor(s):

    By James Burton Deemy

    College of Coastal Georgia

    In this exercise students work in groups to design an agroecosystem to feed a Mars Colony while accounting for space and energy transfer limitations.

    https://qubeshub.org/qubesresources/publications/1296/?v=1

13. Island Frogs

    11 Jun 2019 | Teaching Materials | Contributor(s):

    By James Burton Deemy

    College of Coastal Georgia

    This is an exercise in island biogeography that allows students to reconstruct splits in the evolutionary history of several hypothetical frog species.

    https://qubeshub.org/qubesresources/publications/1295/?v=1

14. A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!

    07 Jun 2019 | Teaching Materials | Contributor(s):

    By Rachael St. Jacques¹, Max Maza¹, Sabrina Robertson², Guoqing Lu³, Andrew Lonsdale⁴, Ray A Enke⁵

    1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University

    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    https://qubeshub.org/qubesresources/publications/1092/?v=2

15. Exploring how climate will impact plant-insect distributions and interactions using open data and informatics

    06 Jun 2019 | Teaching Materials | Contributor(s):

    By Wendy Clement¹, Kathleen Prudic², Jeffrey Oliver³

    1. The College of New Jersey 2. University of Arizona 3. University of Arizona Libraries

    This teaching module provides an entry point for students to learn about data science, open data repositories (e.g., citizen science data), and species distribution modeling to study the effects of...

    https://qubeshub.org/qubesresources/publications/1286/?v=1

16. Figure of the Day - Teaching Notes - Boersma

    01 Jun 2019 | Teaching Materials | Contributor(s):

    By Kate S Boersma

    University of San Diego

    Teaching notes from my application of Figure of the Day in my BIOL305 Ecology lecture course for biology majors.

    https://qubeshub.org/qubesresources/publications/1276/?v=1

17. Introduction to Growth Mindset - Teaching Notes - Boersma

    01 Jun 2019 | Teaching Materials | Contributor(s):

    By Kate S Boersma

    University of San Diego

    Teaching notes from my use of BIOMAAP Growth Mindset teaching materials in my 300 level Ecology class for majors.

    https://qubeshub.org/qubesresources/publications/1274/?v=1

18. Modification of "Exploring the population dynamics of wintering bald eagles through long-term data" module

    30 May 2019 | Teaching Materials | Contributor(s):

    By Kaitlin Stack Whitney

    Rochester Institute of Technology

    This module is a modification of the Beckstead et al. module in TIEE Volume 7. It includes a meta-cognition based model and self reflection, no statistics, and is organized to be done in 1-2...

    https://qubeshub.org/qubesresources/publications/1164/?v=1

19. Processes that Regulate Patterns of Species and Genetic Diversity

    29 May 2019 | Teaching Materials | Contributor(s):

    By Jillian K. Decker

    State University of New York - Rockland Community College

    This activity was developed for an undergraduate upper level ecology course for Environmental or Biological Science majors. Classes of ~20 students work best for the activity.

    https://qubeshub.org/qubesresources/publications/1245/?v=1

20. Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach

    29 May 2019 | Teaching Materials | Contributor(s):

    By Ami Erickson

    This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein...

    https://qubeshub.org/qubesresources/publications/1247/?v=1