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Data Management in Excel and R using National Ecological Observatory Network's (NEON) Small Mammal Data
13 Jan 2021 | Datasets | Contributor(s):
By Marguerite Mauritz1, Sarah McCord2
1. University of Texas at El Paso 2. USDA ARS Jornada Experimental Range
Students use small mammal data from the National Ecological Observatory Network to understand necessary steps of data management from data collection to data analysis by re-organising excel sheets...
The Ames Test
08 Jan 2021 | Teaching Materials | Contributor(s):
By Nathan Goodson-Gregg, Elizabeth A. De Stasio
Introduction to the Ames Test, published as GSA Learning Resource
Investigating human impacts on Southeastern US stream ecology using R
01 Jan 2021 | Teaching Materials | Contributor(s):
By Alicia Caughman1, Emily Weigel1
Georgia Institute of Technology
Adaptation of the "Investigating human impacts on stream ecology: Scaling up from Local to National with a focus on the Southeast" specifically to focus on self-paced R code instruction
The Human Microbiome Biodiversity in Health and Disease
By Angela Peña-Gonzalez1, Emily Weigel1
The students will analyze the human gut and vaginal microbiomes in healthy and diseased states using diversity of bacteria as determined by 16SrRNA sequence.
Reflective Writing Tools: Building Skills and Habits of Thinking in Becoming a Scientist
25 Dec 2020 | Teaching Materials | Contributor(s):
By Sally Molloy1, William Davis2, Elizabeth Moy3, GC Jernstedt4, Melinda Harrison5, Vinayak Mathur5, Matthew David Mastropaolo6
1. University of Maine 2. Washington State University 3. Southeastern Pennsylvania Consortium for Higher Education 4. Dartmouth College 5. Cabrini University 6. Neumann University
Reflective writing tools are intended to help students better connect current learning experiences to prior learning, engage the role of emotion in current and future learning, and assess learning...
Investigating Evidence for Climate Change (Project EDDIE) with CO2 and 13CO2 data: adapted for R
23 Dec 2020 | Teaching Materials | Contributor(s):
By Marguerite Mauritz
University of Texas at El Paso
This is an adaptation to work in R of Investigating Evidence for Climate Change (Project) by Hage, M. 2020. Students will investigate geologic and modern evidence for global temperature and...
Chapter 2: Data sampling, accuracy, and precision
By Raisa Hernández-Pacheco1, Alexis A Diaz1
California State University-Long Beach
Biostatistics Using R: A Laboratory Manual was created with the goals of providing biological content to lab sessions by using authentic research data and introducing R programming language....
Chapter 1: Introduction to R and RStudio
Is bigger always better? An investigation on the effect of drought on different sizes of trees
11 Dec 2020 | Teaching Materials | Contributor(s):
By Jessica Brzyski
Seton Hill University
This data set was compiled from worldwide data to examine the effects of drought on trees. Included in the dataset are measurements of growth and mortality as they relate to the size category of...
Adapting "Lichens in Diverse Landscapes" for Independent Projects in BIO 3317 Ecology at McDaniel College
09 Dec 2020 | Teaching Materials | Contributor(s):
By Holly Martinson
This adaptation shows how students in Ecology at McDaniel College used the Lichens in Diverse Landscapes Module 2 (Lichens in YOUR Local Landscape) in Fall 2020.
An Adaptation of "Lichens in Diverse Landscapes" for BIO 3400 Ecology at Greensboro College
08 Dec 2020 | Teaching Materials | Contributor(s):
By Sandra Cooke
This resource includes a lichen data analysis lab that I adapted for students in BIO 3400 Ecology, an upper level in person course at Greensboro College that met during the Fall 2020 semester.
Backyard Beetles + Pollinators Lab for BIO 3400 Ecology at Greensboro College
This contains Dr. Sandra Cooke's modifications to the EREN-NEON FLP Backyard Beetles + Pollinators project developed for BIO 3400 Ecology, an upper level course taught in person at Greensboro...
Case Study: Pollination of the Early Spider Orchid (Ophrys sphegodes) by the Solitary Bee (Andrena nigroaenea)
03 Dec 2020 | Teaching Materials | Contributor(s):
By Anna Monfils1, Debra Linton1
Central Michigan University
The research uses natural history collection data to explore a potential phenological shift between an orchid that employs sexual deception and a solitary bee.
BIOME Avida ED Report video - YouTube
By Louise Mead1, Lee Edwards2, Kevin Geedey3, J. Phil Gibson4, Jeremiah Wagner5, Ana María González
1. BEACON Center for the Study of Evolution in Action 2. Greenville Technical College 3. Augustana College 4. University of Oklahoma 5. Mid Michigan Community College
Avida-ED is a digital evolution software program that allows students to ask questions and test hypotheses related to evolutionary concepts. Our working group explored how to incorporate Avida-ED...
Traditional Ecological Knowledge and Natural History
01 Dec 2020 | Teaching Materials | Contributor(s):
In this module, students will explore Western Science and Traditional Ecological Knowledge and review a case study of how the TEK of the Inuit people provided a way of knowing and understanding the...
Team microBIOME Fall 2020 - DIY microbiome analysis
25 Nov 2020 | Teaching Materials | Contributor(s):
By Davida Smyth1, Alice Tarun2, Christine Girtain3, Melanie Lenahan4, Maira Goytia, Khuanchivin Geena Sompanya5, Theodore Muth6
1. The New School 2. Alfred State College 3. Toms River Regional School NJ 4. Raritan Valley Community College 5. CUNY 6. CUNY Brooklyn College
This is our final team report for this year's BIOME Institute 2020. Learn about what we got up to and what we're planning for Spring 2021. If you want more information on REMNet go...
Genomics Lessons with GEA - RNA-Seq CURES
By Vince Buonaccorsi1, Marcella Denise Cervantes2, Douglas L Chalker3, Maira Goytia, Wilson Leung3, Laurel Lorenz4, Laura Reed, Anne Rosenwald5, Analyne Manzano Schroeder6, Emily Wiley7, Jason Williams8
1. Juniata College 2. Albion College 3. Washington University in St. Louis 4. Princeton 5. Georgetown University 6. Sanford Burnham Prebys Medical Discovery Institute 7. Claremont McKenna College 8. Cold Spring Harbor Laboratory
Our BIOME Group worked towards developing a set of learning goals for faculty who plan to launch a CURE based on RNA-Seq data. We also developed a workflow for analysis of either prokaryotic or...
COVID-19 educational module | Department of Mathematics
24 Nov 2020 | Teaching Materials | Contributor(s):
By Glenn Ledder
University of Nebraska Lincoln
This resource is a module you can use to teach your students the basics of epidemic behavior using a model geared specifically to Covid-19. Students can address key questions using pre-designed...
Analysis of Amylase Activity
By Allison Carter Burlyn1, Christina Fieber1, Melanie Lenahan2
1. Horry-Georgetown Technical College 2. Raritan Valley Community College
This lab is an exploration of enzyme function and the effects of environmental conditions on the activity of the enzyme amylase. The lab utilizes analytical and graphing skills to assess enzyme...
Functional and structural analysis of Amylase activity
23 Nov 2020 | Teaching Materials | Contributor(s):
By Ishrat Rahman1, Aubrey Allen Smith1, Evdokia Kastanos2
1. Montgomery College 2. Montgomery College/Rockville
This exercise was developed to allow students to apply the scientific method and use their knowledge of enzymes to investigate the relationship between enzyme activity and structure. Students...