Datasets  R Code  R Pubs

Datasets  R Code  R Pubs

Summary table of plots (by Kyla Jackson)

READ ME FIRST:  This collection provides additional resources to support classes teaching from The Analysis of Biological Data by Michael Whitlock and Dolph Schluter, broken down by chapter.  Each chapter post has at least three buttons:  Datasets, which links to the datasets for that chapter; R Code, which links to the R code for that chapter; and R Pubs, which links to a different version of the R code page that contains additional code output and results.

Website

I showed up to my first BioQUEST workshop in 1999. I thought I was there to borrow all the good curriculum ideas I could. I never dreamed I would meet Maura Flannery and share a teaching philosophy. Maura wrote about her experience and this made me a BQ Lifer.

I showed up to my first BioQUEST workshop in 1999. I thought I was there to borrow all the good curriculum ideas I could. I never dreamed I would meet Maura Flannery and share a teaching philosophy. Maura wrote about her experience and this made me a BQ Lifer.

Pat, Ethel, and Tony demonstrate the super-cool 3D glasses for the 3D demonstration at the University of Delaware (2015).

Keep your eyes out for cool biology/math art. Add your photos here!

2015 - Harvey Mudd

We work hard and snacks fuel our thinking. Oreos are a staple. You will also find Diet Coke, because this fuels BQ founder John Jungck.

What do you request for this year's cafe?

Smith R. 2008. Modeling Disease Ecology With Mathematics. New York: American Institute of Mathematical Sciences. 

Here is a link to the book:

https://www.amazon.com/Modelling-Mathematics-Differential-Equations-Dynamical/dp/1601330049

Ostebee A., and Zorn P. 1994. Calculus From Graphical and Symbolic Points of View. Saunders College Publishing.

Here is a link to the book:

https://books.google.com/books?id=d7ZGGM49tBkC&pg=PA41&lpg=PA41&dq=Ostebee+A.,+and+Zorn+P.+1994.+Calculus+From+Graphical+and+Symbolic+Points+of+View&source=bl&ots=Fe9CtxvuQ5&sig=lry6xEcZcEGy01jinJgpieKkbZI&hl=en&sa=X&ved=0ahUKEwjq7JnYjq3NAhVKdlIKHdeiBWIQ6AEIHjAA#v=onepage&q=Ostebee%20A.%2C%20and%20Zorn%20P.%201994.%20Calculus%20From%20Graphical%20and%20Symbolic%20Points%20of%20View&f=false

Neuhauser C. 2010. Calculus for Biology and medicine. Pearson Education. 

Here is a link to the book:

https://www.amazon.com/Calculus-Biology-Medicine-Life-Sciences/dp/0321644689

Ledder G. 2005. Differential Equations: A modeling Approach. McGraw-Hill Education.

Here is a link to the book:

https://www.amazon.com/Differential-Equations-Modeling-Glenn-Ledder/dp/0072422297

Greenwell R., Ritchey N., and Lial M. 2014. Calculus With Applications for the Life Sciences. Pearson Education. 

Here is a link to the book:

https://www.amazon.com/Calculus-Applications-Sciences-Raymond-Greenwell/dp/0201745828

Dick T., and Patton C. 1994. Calculus of a single Variable. PWS Publishing Company. 

Here is a link to the book:

https://www.amazon.com/Calculus-Single-Variable-Thomas-Dick/dp/0534939384/ref=sr_1_5?s=books&ie=UTF8&qid=1466097849&sr=1-5&refinements=p_27%3AThomas+P.%2C+Patton%2C+Charles+M.+Dick

Comar T. 2013 Undergraduate Mathematics for the Life Sciences: Models Processess & Directions (Eds.). Biocalculus at Benedictine University. Mathematical Association of America.

Here is a link to the book:

http://universitypublishingonline.org/maa/aaa/ebook.jsf?bid=CBO9781614443162

Bodine E., Lienhart S., and Gross L. 2014. Mathematics for the Life Sciences. Princeton University Press. 

Here is a link to the book:

http://press.princeton.edu/titles/10298.html

Bender E. 1978.  An Introduction to Mathematical Modeling. Wiley-Interscience. 1-46. 

Here is a link to the book:

https://books.google.com/books?hl=en&lr=&id=FvHDAgAAQBAJ&oi=fnd&pg=PA1&dq=Bender+E.+1978.+An+Introduction+to+Mathematical+Modeling.+Wiley-Interscience&ots=XkNyozGM_2&sig=XhXNb2xio_Wg3uoR1GAm8nIEXck#v=onepage&q&f=false

Alder F. 2012. Modeling the Dynamics of Life: Calculus and Probability for Life Scientists. Brooks Cole Publishing Co. 

Here is a link to the book 

http://www.cengage.com/search/productOverview.do?N=16+4294967225+4294947908&Ntk=P_EPI&Ntt=10192200511921727601168515210449811212&Ntx=mode%2Bmatchallpartial

Hughes-Hallet D., Gleason A., and Flath D. 2013. Calculus: Single and Multivariate. Wiley and Sons.

Here's a link to the book:

https://www.amazon.com/Calculus-Single-Multivariable-Deborah-Hughes-Hallett/dp/1118231147

Arietta Fleming Davies and Gaby Hamerlinck rocked it at Life Discovery with a QUBES Faculty Mentoring Network workshop, and sessions on DryadLab and DataNuggets&MathBench.  

Following good tax keeping protocol, financial records older than 7 years were shredded, as were about 10 boxes of unreadable disc storage devices, including large floppys.  Dare we admit remembering using those?  

I went through ALL these boxes.  I commend the record keepers of BioQUEST who faithfully kept every draft, printed out every email, and made multiple copies of anything official.  It was a good day when we began to trust our online email archives.  I could map every trip any BioQUEST staff made over the years based on the meticulous reimbursement receipts.  Among my favorite finds: the "Road Map/Anti-panic File," a copy of American Biology Teacher from ...? and priceless, a supportive letter from none other than our own Paul Ryan.  How things change.  Any guesses where that article on Buckminster Fuller was printed?  It wasn't Science. Who says archive diving is boring? 

In August 2015 we welcomed Gaby Hamerlinck to the BioQUEST family.  Gaby brings a deep love of quantitative biology and teaching to the QUBES project and we are lucky to have her.  Note: she is taller in person.  

Awesome postdocs wow NABT participants with QUBES!  In true BioQUEST fashion, they did a workshop (technically two), one session and a poster.  Well done!